Browse Element(s) Details


Os.54154.1.S1_at

Description gb:AK102224.1
DB_XREF= gi:32987433
TID=Os.54154.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54154 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033087M22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033087M22, full insert sequence.
FL= gb:AK102224.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3394010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g33900OsAffx.21897.5.S1_x_at7/116+19717912..19720854retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g33910NANA6+19723345..19723623hypothetical protein
LOC_Os06g33920Os.32493.1.S1_at11/116+19729663..19734062expressed protein
LOC_Os06g33930OsAffx.15718.1.S1_at11/116+19735568..19739290Uncharacterized BCR, COG1963 family protein, expressed
LOC_Os06g33940Os.4386.1.S1_s_at11/116+19742868..19745340expressed protein
LOC_Os06g33940Os.54154.1.S1_at10/116+19742868..19745340expressed protein
LOC_Os06g33950NANA6+19769809..19773453retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54154.1.S1_at--296--1711Chr06:19743409..19743433 (25 bp)
ACCAGCTCTTCCAGGGCAGGGTCAT
LOC_Os06g33940
Os.54154.1.S1_at--1057--3751Chr06:19743404..19743428 (25 bp)
CTCTTCCAGGGCAGGGTCATCGCCG
LOC_Os06g33940
Os.54154.1.S1_at--200--7211Chr06:19743375..19743399 (25 bp)
GTCGTCGCCGGCTGCCATGGCTGCT
LOC_Os06g33940
Os.54154.1.S1_at--463--771Chr06:19742991..19743015 (25 bp)
ATGTGGCTTTGAAACCTAATTATAC
LOC_Os06g33940
Os.54154.1.S1_at--775--5551Chr06:19742981..19743005 (25 bp)
GAAACCTAATTATACATGCATGAGA
LOC_Os06g33940
Os.54154.1.S1_at--516--9751Chr06:19742947..19742971 (25 bp)
TAATATTTCTGATTTTCCCATGCAT
LOC_Os06g33940
Os.54154.1.S1_at--920--6531Chr06:19742937..19742961 (25 bp)
GATTTTCCCATGCATTTTTGGATTT
LOC_Os06g33940
Os.54154.1.S1_at--581--6671Chr06:19742908..19742932 (25 bp)
GTTGCTTCTTAATTAGGATGCTTCA
LOC_Os06g33940
Os.54154.1.S1_at--152--7991Chr06:19742893..19742917 (25 bp)
GGATGCTTCATAATTGCTGGCTGAT
LOC_Os06g33940
Os.54154.1.S1_at--47--9131Chr06:19742879..19742903 (25 bp)
TGCTGGCTGATGAATGAGAACCGAT
LOC_Os06g33940
Os.54154.1.S1_at--79--5271Chr06:19742868..19742892 (25 bp)
GAATGAGAACCGATATTAATTTACC
NONE
Target Sequence 
ACCAGCTCTTCCAGGGCAGGGTCATCGCCGGAGCGTCGTCGCCGGCTGCCATGGCTGCTCCTAGCCACCACCAGCATCTC
ATGGATCAGCTCGCCGGCGGCGGCGGCGGCACCGCCTCGTCGTTGCAGAGGCTTCCACTGCAGTATCTGGGGTGCGAGGC
AGCCGACCTGCTCAGGTTCTCCAAGTAGAGAGATTATCCCTCCATGCATGCATGGATCACTTGAACTAAGCTAGCTTAAT
TAGCTGCCACCGATAAATGAGCAGTTGATGATGGTGATGATGATCTGAATGATCAGCTCATGTTTTTTTGGTTAGACTGG
TTAATTTGATCTTCCTTTTGGTATGGAGCTTAATGCTTCCAAGTGTATATACACTCTATGCTATGCTATGCTATGTTTTC
CCATGTGCATGCATGCAAATGTGGCTTTGAAACCTAATTATACATGCATGAGAATACTTAATTAATATTTCTGATTTTCC
CATGCATTTTTGGATTTAAGTGTTGCTTCTTAATTAGGATGCTTCATAATTGCTGGCTGATGAATGAGAACCGATATTAA
TTTACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54154.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis