Browse Element(s) Details


Os.54184.1.S1_at

Description gb:AK102408.1
DB_XREF= gi:32987617
TID=Os.54184.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54184 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033092M06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033092M06, full insert sequence.
FL= gb:AK102408.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3020011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g30170OsAffx.6449.1.S1_at11/119+18359710..18362282F-box protein interaction domain containing protein, expressed
LOC_Os09g30180Os.23911.1.S1_at10/119+18363591..18367258F-box protein interaction domain containing protein, expressed
LOC_Os09g30190OsAffx.30096.1.S1_x_at11/119+18374695..18378226protein kinase family protein, putative, expressed
LOC_Os09g30190Os.56726.1.S1_x_at10/119+18374695..18378226protein kinase family protein, putative, expressed
LOC_Os09g30200Os.54184.1.S1_at11/119+18380039..18383341expressed protein
LOC_Os09g30210Os.29965.1.S1_at11/119+18386471..18390683expressed protein
LOC_Os09g30220Os.50526.1.S1_at11/119+18390893..18396838NB-ARC domain containing protein, expressed
LOC_Os09g30230Os.51899.1.S1_at11/119+18401209..18403263RXO1 disease resistance protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54184.1.S1_at--1028--4471Chr09:18382749..18382773 (25 bp)
GCCTGTTCTCTTCAGCATTGCAATA
LOC_Os09g30200
Os.54184.1.S1_at--900--31Chr09:18382791..18382815 (25 bp)
ATTGTAAGGCCATCGCTTCATCTTT
LOC_Os09g30200
Os.54184.1.S1_at--406--8071Chr09:18382883..18382907 (25 bp)
GGAGCAGCCGAAACCTGTTCTTAGG
LOC_Os09g30200
Os.54184.1.S1_at--314--6711Chr09:18382899..18382923 (25 bp)
GTTCTTAGGCCATTGCAAAGCGTTA
LOC_Os09g30200
Os.54184.1.S1_at--736--10011Chr09:18382922..18382946 (25 bp)
TAGCAGCTACGACCTTGCCAGGGAA
LOC_Os09g30200
Os.54184.1.S1_at--48--5431Chr09:18383002..18383026 (25 bp)
GAACCAGCTTGGATTACTTCGAGTT
LOC_Os09g30200
Os.54184.1.S1_at--355--10151Chr09:18383034..18383058 (25 bp)
TATCTCTTCAGGGATCCTGCTGAGA
LOC_Os09g30200
Os.54184.1.S1_at--565--8811Chr09:18383080..18383104 (25 bp)
TGATTACGTTGCACGCTACACGGTG
LOC_Os09g30200
Os.54184.1.S1_at--1028--5211Chr09:18383150..18383174 (25 bp)
GAATTTGACCTGCTAAGTGCTAAAA
LOC_Os09g30200
Os.54184.1.S1_at--894--3471Chr09:18383257..18383281 (25 bp)
CAGGTAGGATCGTTTTGTGTCTCAA
LOC_Os09g30200
Os.54184.1.S1_at--266--1671Chr09:18383293..18383317 (25 bp)
ACCACAACAGCCAAGTTCCTTTTTG
LOC_Os09g30200
Target Sequence 
GCCTGTTCTCTTCAGCATTGCAATATCCACCCAATGCTCAACATTGTAAGGCCATCGCTTCATCTTTTGCCCATTGCGTC
CATCATTGCTCCACAAATGGGCAGAATCACAAGTACCAGTCTCTTTGCACCTCAGGAGCAGCCGAAACCTGTTCTTAGGC
CATTGCAAAGCGTTAGCAGCTACGACCTTGCCAGGGAACACCAAATGAATCTGCGGAGGGAGTTTGAGATGAGAGGACAA
ACAATGCCTGCAGGAACCAGCTTGGATTACTTCGAGTTCCTGGAATATCTCTTCAGGGATCCTGCTGAGAAGGAGAAGTG
GCTGCAAACTATGATTACGTTGCACGCTACACGGTGGTGATCAATGATAGTTGGTTGGTGACTTGGTGTGTATCTTTTTG
AGAATTTGACCTGCTAAGTGCTAAAAGGATCAGCATTTCTCTAGGATAGAAGAACTTGGCATTTCATTTCAAGAGGTGCT
GTGTTAGATGGATGATGTCGAAAATGTACAGGTAGGATCGTTTTGTGTCTCAAAACTCTGACTGACCACAACAGCCAAGT
TCCTTTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54184.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis