Browse Element(s) Details


OsAffx.6449.1.S1_at

Description tigr:9637.m02691
TID=OsAffx.6449.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3017011/11F-box protein interaction domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g30150Os.9184.1.S1_at11/119+18338633..18342613Protein kinase G11A, putative, expressed
LOC_Os09g30150Os.16381.1.S1_a_at1/119+18338633..18342613Protein kinase G11A, putative, expressed
LOC_Os09g30160Os.7629.1.S1_at3/119+18350993..18351638Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g30160OsAffx.6448.1.S1_at1/119+18350993..18351638Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g30170OsAffx.6449.1.S1_at11/119+18359710..18362282F-box protein interaction domain containing protein, expressed
LOC_Os09g30180Os.23911.1.S1_at10/119+18363591..18367258F-box protein interaction domain containing protein, expressed
LOC_Os09g30190OsAffx.30096.1.S1_x_at11/119+18374695..18378226protein kinase family protein, putative, expressed
LOC_Os09g30190Os.56726.1.S1_x_at10/119+18374695..18378226protein kinase family protein, putative, expressed
LOC_Os09g30200Os.54184.1.S1_at11/119+18380039..18383341expressed protein
LOC_Os09g30210Os.29965.1.S1_at11/119+18386471..18390683expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6449.1.S1_at--82--131Chr09:18361219..18361243 (25 bp)
ATTCAGATCTGGACTCTTCACATCC
LOC_Os09g30170
OsAffx.6449.1.S1_at--233--9571Chr09:18361233..18361257 (25 bp)
TCTTCACATCCATCTAGAGCAAAGG
LOC_Os09g30170
OsAffx.6449.1.S1_at--747--1451Chr09:18361265..18361289 (25 bp)
AGAAGTACATGATCCAGTCCTCACC
LOC_Os09g30170
OsAffx.6449.1.S1_at--922--1791Chr09:18361287..18361311 (25 bp)
ACCGCAGTGCATTCTTGGACCAAAT
LOC_Os09g30170
OsAffx.6449.1.S1_at--668--7851Chr09:18361348..18361372 (25 bp)
GGTAGCATCCTATATTCTTGTGAGT
LOC_Os09g30170
OsAffx.6449.1.S1_at--807--251Chr09:18361412..18361436 (25 bp)
ATAGGCTGTTAGATTTCACGCCCCG
LOC_Os09g30170
OsAffx.6449.1.S1_at--313--5491Chr09:18361446..18361470 (25 bp)
GAACATGCAATCCTACACCTTTGTG
LOC_Os09g30170
OsAffx.6449.1.S1_at--800--5571Chr09:18361470..18361494 (25 bp)
GAAATCACTTGTACGGTTAGATGCA
LOC_Os09g30170
OsAffx.6449.1.S1_at--6--1031Chr09:18362106..18362126 (21 bp)
AGGTAGAGCTAACCTGCCTATCTGC
LOC_Os09g30170
OsAffx.6449.1.S1_at--1123--3811Chr09:18362115..18362139 (25 bp)
CTGCCTATCTGCCTCAAATCAAGAA
LOC_Os09g30170
OsAffx.6449.1.S1_at--708--391Chr09:18362220..18362242 (23 bp)
ATCAGGTCGCAATCTCCTTTTACAT
LOC_Os09g30170
Target Sequence 
ATTCAGATCTGGACTCTTCACATCCATCTAGAGCAAAGGTGGATCCAGAAGTACATGATCCAGTCCTCACCGCAGTGCAT
TCTTGGACCAAATATTTTCCATGGGGATAAGATTTTGTCGCAACAATATGGTAGCATCCTATATTCTTGTGAGTTGCTTG
GAAAGAACCTAGAGGTTAAAATGAGCAATGCAGATAGGCTGTTAGATTTCACGCCCCGCAAGCCAGGGAACATGCAATCC
TACACCTTTGTGAAATCACTTGTACGGTTAGATGCATACAAGAAGGCTAGTATTGTAACTAGGAAGAATTTCCACACAGT
AACCAACTGGCTGTTGCTGCGTCAACCGGATGATGAAGCATTGAAGTGTATAAGCATGAGAATTGATCAAATGTTGCGTT
GTCTATCAGATTGTCCAAATCAGGTAGAGCTAACCTGCCTATCTGCCTCAAATCAAGAAGGTGGTGACCTCTTAAGGATG
ATAACAAGTTATTTACGCGATCAGGTCGCAATCTCCTTTTACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6449.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis