Browse Element(s) Details


Os.9184.1.S1_at

Description gb:AK100536.1
DB_XREF= gi:32985745
TID=Os.9184.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9184 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023101N17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023101N17, full insert sequence.
FL= gb:AK100536.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3015011/11Protein kinase G11A, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g30130Os.6165.1.S1_a_at1/119+18315019..18320211Cellulose synthase family protein, expressed
LOC_Os09g30140OsAffx.30095.1.S1_at11/119+18330306..18332053expressed protein
LOC_Os09g30140Os.55282.1.S1_x_at11/119+18330306..18332053expressed protein
LOC_Os09g30140Os.55282.1.S1_at11/119+18330306..18332053expressed protein
LOC_Os09g30150Os.9184.1.S1_at11/119+18338633..18342613Protein kinase G11A, putative, expressed
LOC_Os09g30150Os.16381.1.S1_a_at1/119+18338633..18342613Protein kinase G11A, putative, expressed
LOC_Os09g30160Os.7629.1.S1_at3/119+18350993..18351638Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g30160OsAffx.6448.1.S1_at1/119+18350993..18351638Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g30170OsAffx.6449.1.S1_at11/119+18359710..18362282F-box protein interaction domain containing protein, expressed
LOC_Os09g30180Os.23911.1.S1_at10/119+18363591..18367258F-box protein interaction domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0005737cellular_componentcytoplasm
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9184.1.S1_at--20--5891Chr09:18342019..18342043 (25 bp)
GAGCGACGCTCTTCAATGTCGTTGG
LOC_Os09g30150
Os.9184.1.S1_at--960--5911Chr09:18342077..18342101 (25 bp)
GAGCTTCTCGGCAAGGGACATGATA
LOC_Os09g30150
Os.9184.1.S1_at--411--751Chr09:18342417..18342441 (25 bp)
ATGTAGAGCTCCTCCAGGCATATAT
LOC_Os09g30150
Os.9184.1.S1_at--18--10131Chr09:18342441..18342465 (25 bp)
TATGCCTGGTTATGAGGTACTCTTC
LOC_Os09g30150
Os.9184.1.S1_at--234--7851Chr09:18342456..18342480 (25 bp)
GGTACTCTTCAGCTGTAGATTTGTA
LOC_Os09g30150
Os.9184.1.S1_at--61--8751Chr09:18342477..18342501 (25 bp)
TGTAAGCTCATTTCTGGAACCCCGA
LOC_Os09g30150
Os.9184.1.S1_at--451--5411Chr09:18342493..18342517 (25 bp)
GAACCCCGAGCTATTTTCCATTGAA
LOC_Os09g30150
Os.9184.1.S1_at--337--2831Chr09:18342529..18342553 (25 bp)
AAGTTCATACTCTTGTCTCCATGAC
LOC_Os09g30150
Os.9184.1.S1_at--443--4331Chr09:18342547..18342571 (25 bp)
CCATGACTCTTATCTGTGCTGCAAT
LOC_Os09g30150
Os.9184.1.S1_at--88--3851Chr09:18342565..18342589 (25 bp)
CTGCAATTTTCAAAGCCACCGGTGT
LOC_Os09g30150
Os.9184.1.S1_at--749--2651Chr09:18342577..18342601 (25 bp)
AAGCCACCGGTGTTACTTGAATGGA
LOC_Os09g30150
Target Sequence 
GAGCGACGCTCTTCAATGTCGTTGGCCAGCCCTTGCGGTTCCCAGAATCCCCAATAGTGAGCTTCTCGGCAAGGGACATG
ATAAGGGGATTGCTGGTCAAGGACCNTCAGCACCGACTTGGCTACAAGCGTGGGGCTACTGAGATAAAACNGCATCCATT
CTTTGAGGGTGTCAACTGGGCGCTCATAAGATGCGCGAGCCCTCCAGACATTCCTAAGCCCGTTGAGCTCGATTGTCNCC
CGAAGCAGGTGCCGTCAACGAATGGCAAGGTTGCACCAGCTTCCAACCAGAAGGGCTCAGACAATTATCTAGAGTTTGAA
TTTTTCTAGGTTTTTTCTTTTGTGGTTTCTGAAATCCGAAACNGTGCATTTGAGCTGATGCGCGAAACAAAGAGAAACAT
GTAGAGCTCCTCCAGGCATATATATGCCTGGTTATGAGGTACTCTTCAGCTGTAGATTTGTAAGCTCATTTCTGGAACCC
CGAGCTATTTTCCATTGAACTGCTTAACTCAAGTTCATACTCTTGTCTCCATGACTCTTATCTGTGCTGCAATTTTCAAA
GCCACCGGTGTTACTTGAATGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9184.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis