Browse Element(s) Details


Os.55282.1.S1_at

Description gb:AK107794.1
DB_XREF= gi:32993003
TID=Os.55282.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55282 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-133-D08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-133-D08, full insert sequence.
FL= gb:AK107794.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3014011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g30100NANA9+18292045..18310988NOL1/NOP2/sun family protein, putative, expressed
LOC_Os09g30120Os.6165.1.S1_a_at11/119+18306889..18313233cellulose synthase-like protein CslE, putative, expressed
LOC_Os09g30120OsAffx.30088.2.S1_at1/119+18306889..18313233cellulose synthase-like protein CslE, putative, expressed
LOC_Os09g30120OsAffx.23056.1.S1_at1/119+18306889..18313233cellulose synthase-like protein CslE, putative, expressed
LOC_Os09g30130Os.6165.1.S1_a_at1/119+18315019..18320211Cellulose synthase family protein, expressed
LOC_Os09g30140OsAffx.30095.1.S1_at11/119+18330306..18332053expressed protein
LOC_Os09g30140Os.55282.1.S1_x_at11/119+18330306..18332053expressed protein
LOC_Os09g30140Os.55282.1.S1_at11/119+18330306..18332053expressed protein
LOC_Os09g30150Os.9184.1.S1_at11/119+18338633..18342613Protein kinase G11A, putative, expressed
LOC_Os09g30150Os.16381.1.S1_a_at1/119+18338633..18342613Protein kinase G11A, putative, expressed
LOC_Os09g30160Os.7629.1.S1_at3/119+18350993..18351638Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g30160OsAffx.6448.1.S1_at1/119+18350993..18351638Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55282.1.S1_at--566--6551Chr09:18330424..18330448 (25 bp)
GATTCAGAAGAAATGGACAACACTA
LOC_Os09g30140
Os.55282.1.S1_at--6--8151Chr09:18330410..18330434 (25 bp)
GGACAACACTAAATACGTATGCTTT
LOC_Os09g30140
Os.55282.1.S1_at--660--1871Chr09:18330403..18330427 (25 bp)
ACTAAATACGTATGCTTTGAGGTTC
LOC_Os09g30140
Os.55282.1.S1_at--571--631Chr09:18330392..18330416 (25 bp)
ATGCTTTGAGGTTCACCTGAATGCA
LOC_Os09g30140
Os.55282.1.S1_at--593--7891Chr09:18330383..18330407 (25 bp)
GGTTCACCTGAATGCATAGTTAGTT
LOC_Os09g30140
Os.55282.1.S1_at--801--9551Chr09:18330347..18330371 (25 bp)
TAATTTCGGTTCCTGTAAATGGCCA
LOC_Os09g30140
Os.55282.1.S1_at--321--10311Chr09:18330344..18330368 (25 bp)
TTTCGGTTCCTGTAAATGGCCACTT
LOC_Os09g30140
Os.55282.1.S1_at--48--7891Chr09:18330340..18330364 (25 bp)
GGTTCCTGTAAATGGCCACTTTTGT
LOC_Os09g30140
Os.55282.1.S1_at--208--7051Chr09:18330333..18330357 (25 bp)
GTAAATGGCCACTTTTGTGAGTCAT
LOC_Os09g30140
Os.55282.1.S1_at--627--8451Chr09:18330328..18330352 (25 bp)
TGGCCACTTTTGTGAGTCATGATAT
LOC_Os09g30140
Os.55282.1.S1_at--1045--7371Chr09:18330317..18330341 (25 bp)
GTGAGTCATGATATCCGTGTAGAAT
LOC_Os09g30140
Target Sequence 
GATTCAGAAGAAATGGACAACACTAAATACGTATGCTTTGAGGTTCACCTGAATGCATAGTTAGTTAACTTTTCTTTTAA
TTTCGGTTCCTGTAAATGGCCACTTTTGTGAGTCATGATATCCGTGTAGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55282.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis