Browse Element(s) Details


OsAffx.23056.1.S1_at

Description gb:AK064419.1
DB_XREF= gi:32974437
TID=OsAffx.23056.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-110-B07, full insert sequence.
FL= gb:AK064419.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g301201/11cellulose synthase-like protein CslE, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g30070Os.50531.1.S1_at11/119+18280422..18286712expressed protein
LOC_Os09g30079NANA9+18288914..18289163NA
LOC_Os09g30090OsAffx.6447.1.S1_at11/119+18289711..18291042hypothetical protein
LOC_Os09g30100NANA9+18292045..18310988NOL1/NOP2/sun family protein, putative, expressed
LOC_Os09g30120Os.6165.1.S1_a_at11/119+18306889..18313233cellulose synthase-like protein CslE, putative, expressed
LOC_Os09g30120OsAffx.30088.2.S1_at1/119+18306889..18313233cellulose synthase-like protein CslE, putative, expressed
LOC_Os09g30120OsAffx.23056.1.S1_at1/119+18306889..18313233cellulose synthase-like protein CslE, putative, expressed
LOC_Os09g30130Os.6165.1.S1_a_at1/119+18315019..18320211Cellulose synthase family protein, expressed
LOC_Os09g30140OsAffx.30095.1.S1_at11/119+18330306..18332053expressed protein
LOC_Os09g30140Os.55282.1.S1_x_at11/119+18330306..18332053expressed protein
LOC_Os09g30140Os.55282.1.S1_at11/119+18330306..18332053expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0000271biological_processpolysaccharide biosynthesis
GO:0009832biological_processcell wall biosynthesis (sensu Magnoliophyta)
GO:0009834biological_processsecondary cell wall biosynthesis (sensu Magnoliophyta)
GO:0030244biological_processcellulose biosynthesis
GO:0005886cellular_componentplasma membrane
GO:0016740molecular_functiontransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016759molecular_functioncellulose synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23056.1.S1_at--953--2392Chr09:4694063..4694087 (25 bp)
AAACTTGCACGTGTGGTTCTGGCCG
NONE
OsAffx.23056.1.S1_at--910--8051Chr08:12792846..12792870 (25 bp)
GGACCCCGGTATACTGTACTAATAT
NONE
OsAffx.23056.1.S1_at--850--7652Chr08:12793054..12793076 (23 bp)
GGGATGCGATCCTTAATAGTTCACT
NONE
OsAffx.23056.1.S1_at--280--3111Chr01:39525108..39525132 (25 bp)
AATAGTTCACTGTTGGCGGAAGCCA
NONE
OsAffx.23056.1.S1_at--202--7131NONE
GTCTTTACCAACTTCCAAATCCAAG
NONE
OsAffx.23056.1.S1_at--310--8251NONE
GGCACTCTTCATTCTTCATTCGAAA
NONE
OsAffx.23056.1.S1_at--441--7191Chr01:39524955..39524979 (25 bp)
GTCGGAGGTTTTTGCCTTGTTATCA
NONE
OsAffx.23056.1.S1_at--909--10831NONE
TTGGGTAAAGCAAACTCCCTCCTTG
NONE
OsAffx.23056.1.S1_at--839--6951NONE
GTAGAACCGGGTTGCGCTGCTTGAT
NONE
OsAffx.23056.1.S1_at--235--4771Chr09:18310665..18310688 (24 bp)
GCTGCTTGATGCTCCGATCGAAAAC
LOC_Os09g30120
OsAffx.23056.1.S1_at--1016--7551NONE
GGGCCATGCCGGTACGACAGAATAT
NONE
Target Sequence 
AAACTTGCACGTGTGGTTCTGGCCGGGGACCCCGGTATACTGTACTAATATGTGTAGGTTCCTGTAATTTGAGTGAGATT
GTCATGGCGCAAAAGCAGATATGGTTCGGTATTCCCTTGTTCCCTGTATTGGTTATGTTCTTTATTTCTTGTCTAGCAGA
AACTAATCGAGCTCCGTCTGATCTCCCAGAAGCGGAAGCTGAATTAGTTGCTGGCTATAATGTGGAATATGCGCGGGATG
CGATCCTTAATAGTTCACTGTTGGCGGAAGCCAATGTCTCGGGGACTCATTCTGACTTAAACAAGGGGTGGGTCTTTACC
AACTTCCAAATCCAAGATTTAGGGAAAAAAAAGAGGGGCAGGGCACTCTTCATTCTTCATTCGAAACTCATGAATGTCGG
GTCGGAGGTTTTTGCCTTGTTATCAAAAAGGGGAGTTGGGTAAAGCAAACTCCCTCCTTGGGCGAGCACGGGGCTTAGTC
AAGTAGAACCGGGTTGCGCTGCTTGATGCTCCGATCGAAAACAAATCAGTGGGGCCATGCCGGTACGACAGAATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23056.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis