Browse Element(s) Details


OsAffx.6447.1.S1_at

Description tigr:9637.m02682
TID=OsAffx.6447.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3009011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g30020NANA9+18261290..18266894retrotransposon protein, putative, unclassified
LOC_Os09g30030Os.12779.1.S1_at2/119+18268252..18268497expressed protein
LOC_Os09g30040NANA9+18271767..18271991expressed protein
LOC_Os09g30050NANA9+18274149..18274718expressed protein
LOC_Os09g30060Os.50081.1.S1_x_at1/119+18277828..18278633hypothetical protein
LOC_Os09g30070Os.50531.1.S1_at11/119+18280422..18286712expressed protein
LOC_Os09g30079NANA9+18288914..18289163NA
LOC_Os09g30090OsAffx.6447.1.S1_at11/119+18289711..18291042hypothetical protein
LOC_Os09g30100NANA9+18292045..18310988NOL1/NOP2/sun family protein, putative, expressed
LOC_Os09g30120Os.6165.1.S1_a_at11/119+18306889..18313233cellulose synthase-like protein CslE, putative, expressed
LOC_Os09g30120OsAffx.30088.2.S1_at1/119+18306889..18313233cellulose synthase-like protein CslE, putative, expressed
LOC_Os09g30120OsAffx.23056.1.S1_at1/119+18306889..18313233cellulose synthase-like protein CslE, putative, expressed
LOC_Os09g30130Os.6165.1.S1_a_at1/119+18315019..18320211Cellulose synthase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6447.1.S1_at--414--391Chr09:18290181..18290205 (25 bp)
ATCACGAGCTCGTCATGGCACGCAA
LOC_Os09g30090
OsAffx.6447.1.S1_at--269--9631Chr09:18290169..18290193 (25 bp)
TCATGGCACGCAAGCGGCAACACCA
LOC_Os09g30090
OsAffx.6447.1.S1_at--95--7651Chr09:18290112..18290136 (25 bp)
GGGAGCAAGAACCTCGTCACGTGCA
LOC_Os09g30090
OsAffx.6447.1.S1_at--816--6151Chr09:18290076..18290100 (25 bp)
GAGGTCAGCGTCTGGGACATACCAA
LOC_Os09g30090
OsAffx.6447.1.S1_at--1141--7611Chr09:18290063..18290087 (25 bp)
GGGACATACCAAGCGGGTTGCTCCT
LOC_Os09g30090
OsAffx.6447.1.S1_at--1136--2671Chr09:18290053..18290077 (25 bp)
AAGCGGGTTGCTCCTCGATGCCTCG
LOC_Os09g30090
OsAffx.6447.1.S1_at--86--9391Chr09:18290039..18290063 (25 bp)
TCGATGCCTCGTTCCGGATCAGCGG
LOC_Os09g30090
OsAffx.6447.1.S1_at--905--3971Chr09:18290012..18290036 (25 bp)
CGGTGACCGACGTGATGGTGATCAA
LOC_Os09g30090
OsAffx.6447.1.S1_at--1161--4251Chr09:18289961..18289985 (25 bp)
CCGGAGACATGGTCAGGCCACGCGA
LOC_Os09g30090
OsAffx.6447.1.S1_at--782--8051Chr09:18289840..18289864 (25 bp)
GGAGAAGGCGAGGTCCGTCGAGCTC
LOC_Os09g30090
OsAffx.6447.1.S1_at--563--8911Chr09:18289772..18289796 (25 bp)
TGCTCCGGGAGGTGACCGCCACCGT
LOC_Os09g30090
Target Sequence 
ATCACGAGCTCGTCATGGCACGCAAGCGGCAACACCAACGCCGCCCTCGTCGGCGTCGGCATGGCGAACGGGAGCAAGAA
CCTCGTCACGTGCACGGAGGACGGCGAGGTCAGCGTCTGGGACATACCAAGCGGGTTGCTCCTCGATGCCTCGTTCCGGA
TCAGCGGCGCGGTGACCGACGTGATGGTGATCAAGAAATCCGCCGCCGCCGACGCCGCCGCCGGAGACATGGTCAGGCCA
CGCGACGGCGGCGTGGGCTTCACCGGCGTGCGCGACGGCGAGGCCTGGAGGAGAGCCGGCGAGGTGGCGCGGATGGAGCA
GACGCTGCGGGAGTCGGAGGTGGAGAAGGCGAGGTCCGTCGAGCTCGTCGAGATGGCCGTCGGCGGGTACAGGAGATGCC
TCCGGCTGATGCTCCGGGAGGTGACCGCCACCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6447.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis