Browse Element(s) Details


Os.12779.1.S1_at

Description gb:AK121447.1
DB_XREF= gi:37991070
TID=Os.12779.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12779 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023141K23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023141K23, full insert sequence.
FL= gb:AK121447.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g300302/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g29980Os.21903.1.S1_at11/119+18239808..18244316transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os09g29980Os.33600.1.S1_at11/119+18239808..18244316transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os09g29990OsAffx.17967.1.S1_at11/119+18247970..18248731hypothetical protein
LOC_Os09g30000OsAffx.30092.1.S1_at11/119+18251434..18253020hypothetical protein
LOC_Os09g30010Os.56233.1.S1_s_at11/119+18256643..18257801Fasciclin-like arabinogalactan protein 1 precursor, putative, expressed
LOC_Os09g30010OsAffx.30093.1.S1_at11/119+18256643..18257801Fasciclin-like arabinogalactan protein 1 precursor, putative, expressed
LOC_Os09g30020NANA9+18261290..18266894retrotransposon protein, putative, unclassified
LOC_Os09g30030Os.12779.1.S1_at2/119+18268252..18268497expressed protein
LOC_Os09g30040NANA9+18271767..18271991expressed protein
LOC_Os09g30050NANA9+18274149..18274718expressed protein
LOC_Os09g30060Os.50081.1.S1_x_at1/119+18277828..18278633hypothetical protein
LOC_Os09g30070Os.50531.1.S1_at11/119+18280422..18286712expressed protein
LOC_Os09g30079NANA9+18288914..18289163NA
LOC_Os09g30090OsAffx.6447.1.S1_at11/119+18289711..18291042hypothetical protein
LOC_Os09g30100NANA9+18292045..18310988NOL1/NOP2/sun family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12779.1.S1_at--901--2051Chr09:18268236..18268260 (25 bp)
ACTTGGATTTATACCCATGGCGCCT
NONE
Os.12779.1.S1_at--1149--3631Chr09:18268290..18268314 (25 bp)
CTTCGTCGCCATGGTGGTAGTGCCG
LOC_Os09g30030
Os.12779.1.S1_at--799--4671Chr09:18268327..18268351 (25 bp)
GCGGAGGAGTCATCCGCCGAGTCCC
LOC_Os09g30030
Os.12779.1.S1_at--882--3791Chr09:18268526..18268550 (25 bp)
CTCGCGTCGTGAACAATCCGTTAAT
NONE
Os.12779.1.S1_at--706--211Chr09:18268549..18268573 (25 bp)
ATTTGATTGATGATCTGGAGCGATT
NONE
Os.12779.1.S1_at--113--7211Chr09:18268597..18268621 (25 bp)
GTCGTCCTGCGATTTGATTACAACT
NONE
Os.12779.1.S1_at--757--6551Chr09:18268612..18268636 (25 bp)
GATTACAACTTGTTCTCTCCTCGTT
NONE
Os.12779.1.S1_at--942--5591Chr09:18268650..18268674 (25 bp)
GAAATTTTCTCATTCTCTAGATTAA
NONE
Os.12779.1.S1_at--335--10431Chr09:18268675..18268699 (25 bp)
TTAGTTTGTAATCGCAGCCTATCGT
NONE
Os.12779.1.S1_at--363--8531Chr09:18268712..18268736 (25 bp)
TGGACTTCATTTCTCCTGTAACAGT
NONE
Os.12779.1.S1_at--619--3431Chr09:18268733..18268757 (25 bp)
CAGTTTTTAATTGTTGTCTACTAAT
NONE
Target Sequence 
ACTTGGATTTATACCCATGGCGCCTCGCGCAGCGCTCTTCCTCGCCGCGCTCCTCTTCGTCGCCATGGTGGTAGTGCCGG
TGGCGAGGGCGGCGGAGGAGTCATCCGCCGAGTCCCCCTCCTCCGAGTCCTCCTCCGAGTCGTCGTCGTCGTCCTCCGCC
GACGCGCCGGCGGAGGGGCCCGACGGGCCGGCGGCGGCGCCCGGCCCCGGCGAGGGGATCGACGGCCTCTCCGACGACAA
CGACGACGACTCCTCCAACTGAGCCCGGCCGGCCGGCCGGCCTCGTCGACCTCGCGTCGTGAACAATCCGTTAATTTGAT
TGATGATCTGGAGCGATTAATAAGGATATATATATATGGTCGTCGTCCTGCGATTTGATTACAACTTGTTCTCTCCTCGT
TTTTTTTTTCGGATGAAATTTTCTCATTCTCTAGATTAATTAGTTTGTAATCGCAGCCTATCGTATTTGTGTTCTTTGGA
CTTCATTTCTCCTGTAACAGTTTTTAATTGTTGTCTACTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12779.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis