Browse Element(s) Details


Os.33600.1.S1_at

Description gb:AK099938.1
DB_XREF= gi:32985147
TID=Os.33600.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33600 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013120H23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013120H23, full insert sequence.
FL= gb:AK099938.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2998011/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g29940Os.14071.1.S1_at10/119+18216456..18220124Auxin-independent growth promoter, putative, expressed
LOC_Os09g29950Os.54107.1.S1_at11/119+18222865..18229941prolyl oligopeptidase family protein, expressed
LOC_Os09g29950Os.54107.2.S1_at11/119+18222865..18229941prolyl oligopeptidase family protein, expressed
LOC_Os09g29950Os.54107.1.S1_x_at11/119+18222865..18229941prolyl oligopeptidase family protein, expressed
LOC_Os09g29960OsAffx.6446.1.S1_at11/119+18233923..18234868Dof domain, zinc finger family protein, expressed
LOC_Os09g29970Os.11662.1.S1_at11/119+18236699..18239535TMV-MP30 binding protein 2C, putative, expressed
LOC_Os09g29980Os.21903.1.S1_at11/119+18239808..18244316transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os09g29980Os.33600.1.S1_at11/119+18239808..18244316transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os09g29990OsAffx.17967.1.S1_at11/119+18247970..18248731hypothetical protein
LOC_Os09g30000OsAffx.30092.1.S1_at11/119+18251434..18253020hypothetical protein
LOC_Os09g30010Os.56233.1.S1_s_at11/119+18256643..18257801Fasciclin-like arabinogalactan protein 1 precursor, putative, expressed
LOC_Os09g30010OsAffx.30093.1.S1_at11/119+18256643..18257801Fasciclin-like arabinogalactan protein 1 precursor, putative, expressed
LOC_Os09g30020NANA9+18261290..18266894retrotransposon protein, putative, unclassified
LOC_Os09g30030Os.12779.1.S1_at2/119+18268252..18268497expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33600.1.S1_at--730--7191Chr09:18242513..18242537 (25 bp)
GTCGGATCGTAATGAAGACTGGGAT
LOC_Os09g29980
Os.33600.1.S1_at--711--751Chr09:18242237..18242261 (25 bp)
ATGTAAGTTCTTAATCTGTTCTCCT
LOC_Os09g29980
Os.33600.1.S1_at--1102--9751Chr09:18242226..18242250 (25 bp)
TAATCTGTTCTCCTTTTTTATGTAA
LOC_Os09g29980
Os.33600.1.S1_at--1068--6471Chr09:18242154..18242178 (25 bp)
GATACTAGTGTATAGCATCATATTC
LOC_Os09g29980
Os.33600.1.S1_at--619--4971Chr09:18242140..18242164 (25 bp)
GCATCATATTCATGTAACCTCATCA
LOC_Os09g29980
Os.33600.1.S1_at--1096--9831Chr09:18242057..18242081 (25 bp)
TAAAGGAATTGCTCAAGCCGAGAAT
LOC_Os09g29980
Os.33600.1.S1_at--682--4831Chr09:18242047..18242071 (25 bp)
GCTCAAGCCGAGAATGTAATTAGTT
LOC_Os09g29980
Os.33600.1.S1_at--1086--4891Chr09:18242016..18242040 (25 bp)
GCTTAACATGTAACTATAGCGCTGT
LOC_Os09g29980
Os.33600.1.S1_at--64--9991Chr09:18242000..18242024 (25 bp)
TAGCGCTGTAGGAAGCAAACCTTTT
LOC_Os09g29980
Os.33600.1.S1_at--188--1751Chr09:18241982..18242006 (25 bp)
ACCTTTTTGTAATCCATTTGCTGAT
LOC_Os09g29980
Os.33600.1.S1_at--156--9131Chr09:18241964..18241988 (25 bp)
TGCTGATTATATGTATTCTCAAACA
LOC_Os09g29980
Target Sequence 
GTCGGATCGTAATGAAGACTGGGATAGGGGAAGATCATCTGGGAGGCGTNGCAGATCAAGGGAGGTTGACCACTCAAAGC
GGCGGCGGATGTCGCCTGAGTAATGTATCTGGATGGGCTATGTTTAGTGTAGGGGTATCGGCAATTCGCGGCGGCATCTT
TTTTGCACATGCCTTTTGGTTAGCGAATCAGCTTGCAACTGTCAACTGTTTACTGCTTATAACATCGGTGGATTTTACCT
GCTTGTCTCCAAGGATCTGTTGTAGCATTAATTGAGATGTAAGTTCTTAATCTGTTCTCCTTTTTTATGTAAATATTCTT
TTTTTTTGNNGNTGTATACCTGTATATAATTTCTTGNTGGATACTAGTGTATAGCATCATATTCATGTAACCTCATCATG
TATACCAGNTTTTGNTGNGNATAGNTATTCTTTTTTCCATTTATTCTTTTGTAGCATAAAGGAATTGCTCAAGCCGAGAA
TGTAATTAGTTTTGTATGCTTAACATGTAACTATAGCGCTGTAGGAAGCAAACCTTTTTGTAATCCATTTGCTGATTATA
TGTATTCTCAAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33600.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis