Browse Element(s) Details


Os.56233.1.S1_s_at

Description gb:AK109663.1
DB_XREF= gi:32994872
TID=Os.56233.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56233 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-144-C01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-144-C01, full insert sequence.
FL= gb:AK109663.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3001011/11Fasciclin-like arabinogalactan protein 1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g29960OsAffx.6446.1.S1_at11/119+18233923..18234868Dof domain, zinc finger family protein, expressed
LOC_Os09g29970Os.11662.1.S1_at11/119+18236699..18239535TMV-MP30 binding protein 2C, putative, expressed
LOC_Os09g29980Os.21903.1.S1_at11/119+18239808..18244316transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os09g29980Os.33600.1.S1_at11/119+18239808..18244316transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os09g29990OsAffx.17967.1.S1_at11/119+18247970..18248731hypothetical protein
LOC_Os09g30000OsAffx.30092.1.S1_at11/119+18251434..18253020hypothetical protein
LOC_Os09g30010Os.56233.1.S1_s_at11/119+18256643..18257801Fasciclin-like arabinogalactan protein 1 precursor, putative, expressed
LOC_Os09g30010OsAffx.30093.1.S1_at11/119+18256643..18257801Fasciclin-like arabinogalactan protein 1 precursor, putative, expressed
LOC_Os09g30020NANA9+18261290..18266894retrotransposon protein, putative, unclassified
LOC_Os09g30030Os.12779.1.S1_at2/119+18268252..18268497expressed protein
LOC_Os09g30040NANA9+18271767..18271991expressed protein
LOC_Os09g30050NANA9+18274149..18274718expressed protein
LOC_Os09g30060Os.50081.1.S1_x_at1/119+18277828..18278633hypothetical protein
LOC_Os09g30070Os.50531.1.S1_at11/119+18280422..18286712expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56233.1.S1_s_at--569--6131Chr09:18257176..18257200 (25 bp)
GAGGGCGACGCCGTCACCATCAAGA
LOC_Os09g30010
Os.56233.1.S1_s_at--471--1831Chr09:18257216..18257240 (25 bp)
ACGCCGCGCGGGTCAAGTCCACGGT
LOC_Os09g30010
Os.56233.1.S1_s_at--902--431Chr09:18257263..18257287 (25 bp)
ATCTTCACCGTCGACGCGGTGATCG
LOC_Os09g30010
Os.56233.1.S1_s_at--336--4691Chr09:18257350..18257374 (25 bp)
GCGGACGCTCCCAAGGCCAGTAAGC
LOC_Os09g30010
Os.56233.1.S1_s_at--331--4151Chr09:18257432..18257456 (25 bp)
CGCCTCCGGCGGACCAGAAGAAGGA
LOC_Os09g30010
Os.56233.1.S1_s_at--48--3831Chr09:18257535..18257559 (25 bp)
CTCCACATTGGCCTAGGGCAATTGT
LOC_Os09g30010
Os.56233.1.S1_s_at--762--3611Chr09:18257577..18257601 (25 bp)
CTTGGTTGATGATCCATTGGCGTGA
LOC_Os09g30010
Os.56233.1.S1_s_at--110--9251Chr09:18257589..18257613 (25 bp)
TCCATTGGCGTGATCGTGGTGTGAT
LOC_Os09g30010
Os.56233.1.S1_s_at--1154--4651Chr09:18257615..18257639 (25 bp)
GCGTGTTGATGTGCTTGCGAGATTT
LOC_Os09g30010
Os.56233.1.S1_s_at--1033--4911Chr09:18257627..18257651 (25 bp)
GCTTGCGAGATTTGTGCTTACTTTC
LOC_Os09g30010
Os.56233.1.S1_s_at--613--10812Chr09:18257638..18257662 (25 bp)
TTGTGCTTACTTTCGTGGAAGAACT
LOC_Os09g30010
Target Sequence 
GAGGGCGACGCCGTCACCATCAAGACCGCCGCCTCCGGGGACGCCGCGCGGGTCAAGTCCACGGTGGTGGACGCCGACCC
CGTCGCCATCTTCACCGTCGACGCGGTGATCGAGCCGGTGGAGCTGTTCAAGCCGGCGCCGTCGCCGACGCCCGCGCCGT
CGCCCGCTCCGGCGGCGGACGCTCCCAAGGCCAGTAAGCCCGCGCACCACCCGGCGCCCGTCGTGGCGGACGCTCCCGGC
CCCGCCGCCACCGACTCGCCTCCGGCGGACCAGAAGAAGGAGGCCAAGAAGAGCGCGGCGGCCGGCGCGCCGCCGTGCGT
CCGGTGGTTCGCCGCGGCGTTGGCCGCCGTCGCCATGGCCTCCACATTGGCCTAGGGCAATTGTTCTTTTTTTTTTGTGT
TCTTGGTTGATGATCCATTGGCGTGATCGTGGTGTGATGGCGTGTTGATGTGCTTGCGAGATTTGTGCTTACTTTCGTGG
AAGAACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56233.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis