Browse Element(s) Details


Os.54107.1.S1_x_at

Description gb:AK110073.1
DB_XREF= gi:32995282
TID=Os.54107.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54107 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-160-F01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-160-F01, full insert sequence.
FL= gb:AK110073.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2995011/11prolyl oligopeptidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g29930Os.16741.1.S1_a_at11/119+18206620..18213969Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os09g29940Os.14071.1.S1_at10/119+18216456..18220124Auxin-independent growth promoter, putative, expressed
LOC_Os09g29950Os.54107.1.S1_at11/119+18222865..18229941prolyl oligopeptidase family protein, expressed
LOC_Os09g29950Os.54107.2.S1_at11/119+18222865..18229941prolyl oligopeptidase family protein, expressed
LOC_Os09g29950Os.54107.1.S1_x_at11/119+18222865..18229941prolyl oligopeptidase family protein, expressed
LOC_Os09g29960OsAffx.6446.1.S1_at11/119+18233923..18234868Dof domain, zinc finger family protein, expressed
LOC_Os09g29970Os.11662.1.S1_at11/119+18236699..18239535TMV-MP30 binding protein 2C, putative, expressed
LOC_Os09g29980Os.21903.1.S1_at11/119+18239808..18244316transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os09g29980Os.33600.1.S1_at11/119+18239808..18244316transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os09g29990OsAffx.17967.1.S1_at11/119+18247970..18248731hypothetical protein
LOC_Os09g30000OsAffx.30092.1.S1_at11/119+18251434..18253020hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004287molecular_functionprolyl oligopeptidase activity
GO:0008236molecular_functionserine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54107.1.S1_x_at--420--6511Chr09:18224441..18224465 (25 bp)
GATATTACATGCCAATCCTGTTCCT
LOC_Os09g29950
Os.54107.1.S1_x_at--831--8791Chr09:18224423..18224447 (25 bp)
TGTTCCTGGTCTGTCATTCTCAAAA
LOC_Os09g29950
Os.54107.1.S1_x_at--901--7511Chr09:18224368..18224392 (25 bp)
GTGGACGCTTCATGCATTGCGATGA
LOC_Os09g29950
Os.54107.1.S1_x_at--137--10391Chr09:18224267..18224291 (25 bp)
TTTTCAGGGCTTTCTACGCTTCAAT
LOC_Os09g29950
Os.54107.1.S1_x_at--633--4891Chr09:18224150..18224174 (25 bp)
GCTTTTGTAATTTTCTGCATCGCAG
LOC_Os09g29950
Os.54107.1.S1_x_at--177--9491Chr09:18224137..18224161 (25 bp)
TCTGCATCGCAGACTGTTAGGTGAG
LOC_Os09g29950
Os.54107.1.S1_x_at--284--51Chr09:18224104..18224128 (25 bp)
ATTGTTATCTTGTGCTCTCAGGGTA
LOC_Os09g29950
Os.54107.1.S1_x_at--173--9531Chr09:18224089..18224113 (25 bp)
TCTCAGGGTAGCACGTGTTTTTCTT
LOC_Os09g29950
Os.54107.1.S1_x_at--570--1271Chr09:18224056..18224080 (25 bp)
AGATCAACTGCTCCGCTATCAAAGG
LOC_Os09g29950
Os.54107.1.S1_x_at--101--9991Chr09:18224027..18224051 (25 bp)
TAGCCTGCACTATCTGCGGTAGTAG
LOC_Os09g29950
Os.54107.1.S1_x_at--632--8831Chr09:18223951..18223975 (25 bp)
TGATTATCTAGCCTTTCTCACAATA
LOC_Os09g29950
Target Sequence 
GATATTACATGCCAATCCTGTTCCTGGTCTGTCATTCTCAAAACTAATATGCAAAGTGGTCATTTTGGTGANGGGTGGAC
GCTTCATGCATTGCGATGAGACAGCTTTTGAGTATGCATTTCTCATGAAAGCCTTGGNGTTGGATGACAATGACAGCTGC
AAAATAGTGTGATAGTTTTCAGGGCTTTCTACGCTTCAATGNTTTGTGCNAGTGTGACATATGACTGCANAAACTGATTA
CATTGTGGTAAGATCTGGCNANCTCATANTCCTTTATTANGTTGAAGAGCATGTGCTTTTGTAATTTTCTGCATCGCAGA
CTGTTAGGTGAGATGAGCAGATTGTTATCTTGTGCTCTCAGGGTAGCACGTGTTTTTCTTAAGACAGGAGATCAACTGCT
CCGCTATCAAAGGTCAGTAGCCTGCACTATCTGCGGTAGTAGCATCAATAAAATGTTACTACAGCGGTCGAAAATATCTG
GTATCTTGTATTCTGATTATCTAGCCTTTCTCACAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54107.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis