Browse Element(s) Details


Os.16741.1.S1_a_at

Description gb:AK071315.1
DB_XREF= gi:32981338
TID=Os.16741.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16741 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033070P13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023084K14, full insert sequence.
FL= gb:AK071315.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2993011/11Helix-loop-helix DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g29910OsAffx.30091.1.S1_x_at11/119+18184100..18184582hypothetical protein
LOC_Os09g29920OsAffx.848.1.S1_at5/119+18187917..18193978retrotransposon protein, putative, unclassified, expressed
LOC_Os09g29930Os.16741.1.S1_a_at11/119+18206620..18213969Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os09g29940Os.14071.1.S1_at10/119+18216456..18220124Auxin-independent growth promoter, putative, expressed
LOC_Os09g29950Os.54107.1.S1_at11/119+18222865..18229941prolyl oligopeptidase family protein, expressed
LOC_Os09g29950Os.54107.2.S1_at11/119+18222865..18229941prolyl oligopeptidase family protein, expressed
LOC_Os09g29950Os.54107.1.S1_x_at11/119+18222865..18229941prolyl oligopeptidase family protein, expressed
LOC_Os09g29960OsAffx.6446.1.S1_at11/119+18233923..18234868Dof domain, zinc finger family protein, expressed
LOC_Os09g29970Os.11662.1.S1_at11/119+18236699..18239535TMV-MP30 binding protein 2C, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009742biological_processbrassinosteroid mediated signaling
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16741.1.S1_a_at--1085--1371Chr09:18213025..18213049 (25 bp)
AGACCTGGTGCTGATGGATCCTCCA
LOC_Os09g29930
Os.16741.1.S1_a_at--380--7611Chr09:18213516..18213540 (25 bp)
GGGCAACAGCTGATGGCGGTTCTCA
LOC_Os09g29930
Os.16741.1.S1_a_at--148--3411Chr09:18213556..18213580 (25 bp)
CAGACCGATTGATCATTCTTTCCTC
LOC_Os09g29930
Os.16741.1.S1_a_at--475--1511Chr09:18213627..18213651 (25 bp)
AGCAGTGACGGCATCGCGTTGAACA
LOC_Os09g29930
Os.16741.1.S1_a_at--589--3171Chr09:18213680..18213704 (25 bp)
CAATCACTTGGCCAACCTGTTTTAA
LOC_Os09g29930
Os.16741.1.S1_a_at--1002--5571Chr09:18213723..18213747 (25 bp)
GAAAGGCGCTTCTCATTGTGGATTG
LOC_Os09g29930
Os.16741.1.S1_a_at--1026--7351Chr09:18213747..18213771 (25 bp)
GTGAAGCTGCTCTTGTACACAGGCT
LOC_Os09g29930
Os.16741.1.S1_a_at--23--9871Chr09:18213762..18213786 (25 bp)
TACACAGGCTTCCATTCCTATGAGA
LOC_Os09g29930
Os.16741.1.S1_a_at--775--5651Chr09:18213803..18213827 (25 bp)
GACAGTCAGTCCTACGTTGTAACCT
LOC_Os09g29930
Os.16741.1.S1_a_at--1084--2531Chr09:18213835..18213859 (25 bp)
AACTCAGCTGCACCTGTTAGCTATG
LOC_Os09g29930
Os.16741.1.S1_a_at--203--3771Chr09:18213917..18213941 (25 bp)
CTCTATCTCTGACCTATTGTGCTGA
LOC_Os09g29930
Target Sequence 
AGACCTGGTGCTGATGGATCCTCCAGTTCTAAGGAGCTCCCCAGTACATCAGCGAACAACGAAAACATGGGTCACCAGCT
GACGATGTTAGGGGGTGGTACTGAAGAACTTCCACACCCAACGAAGCGCCATAAATCGGGCAACAGCTGATGGCGGTTCT
CACTCTGTTGCATCATCCAGACCGATTGATCATTCTTTCCTCCCTACCAACCAGCCAGGACATTCCAGAATTGGATGTAC
ATTATGTTAGCAGTGACGGCATCGCGTTGAACAAGGCAGACCTTGGTGTAATTCTTTCATTCAATCACTTGGCCAACCTG
TTTTAAGAAAAAAAAAAGACCAAAGAAAGGCGCTTCTCATTGTGGATTGTGAAGCTGCTCTTGTACACAGGCTTCCATTC
CTATGAGAAGCTCCCCCCTGACAAGACAGTCAGTCCTACGTTGTAACCTGTATGATAACTCAGCTGCACCTGTTAGCTAT
GTGAAGTAGTAATTCGTTGAAGTATTCTAGATCTCTAGTGCTTCATTGCACATCACTTCTCTATCTCTGACCTATTGTGC
TGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16741.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis