Browse Element(s) Details


Os.14071.1.S1_at

Description gb:AK073003.1
DB_XREF= gi:32983026
TID=Os.14071.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14071 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023150K23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023150K23, full insert sequence.
FL= gb:AK073003.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2994010/11Auxin-independent growth promoter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g29920OsAffx.848.1.S1_at5/119+18187917..18193978retrotransposon protein, putative, unclassified, expressed
LOC_Os09g29930Os.16741.1.S1_a_at11/119+18206620..18213969Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os09g29940Os.14071.1.S1_at10/119+18216456..18220124Auxin-independent growth promoter, putative, expressed
LOC_Os09g29950Os.54107.1.S1_at11/119+18222865..18229941prolyl oligopeptidase family protein, expressed
LOC_Os09g29950Os.54107.2.S1_at11/119+18222865..18229941prolyl oligopeptidase family protein, expressed
LOC_Os09g29950Os.54107.1.S1_x_at11/119+18222865..18229941prolyl oligopeptidase family protein, expressed
LOC_Os09g29960OsAffx.6446.1.S1_at11/119+18233923..18234868Dof domain, zinc finger family protein, expressed
LOC_Os09g29970Os.11662.1.S1_at11/119+18236699..18239535TMV-MP30 binding protein 2C, putative, expressed
LOC_Os09g29980Os.21903.1.S1_at11/119+18239808..18244316transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os09g29980Os.33600.1.S1_at11/119+18239808..18244316transposon protein, putative, CACTA, En/Spm sub-class, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14071.1.S1_at--452--10051Chr09:18217017..18217041 (25 bp)
TAGTTGAGCTCGTTGATCAGTACAA
LOC_Os09g29940
Os.14071.1.S1_at--504--5291Chr09:18216953..18216977 (25 bp)
GAAGGCGTCGCATAGCAGCCGCATG
LOC_Os09g29940
Os.14071.1.S1_at--132--571Chr09:18216864..18216888 (25 bp)
ATCCTCATGAGTGTTTGCACCAACC
LOC_Os09g29940
Os.14071.1.S1_at--997--5912Chr09:18216835..18216859 (25 bp)
GAGCTATCAGTTTTGTGACACCCCT
LOC_Os09g29940
Os.14071.1.S1_at--582--8011Chr09:18216749..18216773 (25 bp)
GGAGGCCCAGTTGTATTGATGAATA
LOC_Os09g29940
Os.14071.1.S1_at--592--1351Chr09:18216709..18216733 (25 bp)
AGAGAATTTGGCCTCCTTTTGCTAG
LOC_Os09g29940
Os.14071.1.S1_at--673--2711Chr09:18216600..18216624 (25 bp)
AAGCATACATGCTCACAGGTGTTGA
LOC_Os09g29940
Os.14071.1.S1_at--435--2451Chr09:18216538..18216562 (25 bp)
AAAATTCTTCCACTGTACTTCTCTG
LOC_Os09g29940
Os.14071.1.S1_at--335--2051Chr09:18216522..18216546 (25 bp)
ACTTCTCTGTACTACATTTGGGCAG
LOC_Os09g29940
Os.14071.1.S1_at--524--7891Chr09:18216492..18216516 (25 bp)
GGTTCATGCATGTACTTTCCTGATT
LOC_Os09g29940
Os.14071.1.S1_at--570--3851Chr09:18216456..18216480 (25 bp)
CTGAATTATCATTTTCGCCGGGCTG
NONE
Target Sequence 
TAGTTGAGCTCGTTGATCAGTACAAAAACGGCACAATGAGNTGGAACCATTTCTCCTCCGCTGTGAAGGCGTCGCATAGC
AGCCGCATGGGCGCGCCATCAAGGAGGCAGATGATTCCTGACAAACCTAAGGAAGAAGACTACTTCTATGCAAATCCTCA
TGAGTGTTTGCACCAACCAGAAGAGCTATCAGTTTTGTGACACCCCTCCCACTATACAGAATTACACATTCTTTCAGGAT
TATATTACAGATTGAATTGGCAATAAATGGAGGCCCAGTTGTATTGATGAATAAAAGCACACGAGATGAGAGAATTTGGC
CTCCTTTTGCTAGGTGACTGTTACATAACATACACGTTGGCATAATTTTTTGCCGTTTTCTCCCAAAAATAAGCATGTAA
TTTTGTTTTGTAAATATAAGCATACATGCTCACAGGTGTTGAGTTGTTCGTACATATACATACGGATCAAGACTTGTCAA
AAATTCTTCCACTGTACTTCTCTGTACTACATTTGGGCAGTTGGTGGTTCATGCATGTACTTTCCTGATTGTTTCTGAAT
TCTGAATTATCATTTTCGCCGGGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14071.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis