Browse Element(s) Details


Os.50526.1.S1_at

Description gb:AK121624.1
DB_XREF= gi:37991247
TID=Os.50526.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50526 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033046D04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033046D04, full insert sequence.
FL= gb:AK121624.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3022011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g30180Os.23911.1.S1_at10/119+18363591..18367258F-box protein interaction domain containing protein, expressed
LOC_Os09g30190OsAffx.30096.1.S1_x_at11/119+18374695..18378226protein kinase family protein, putative, expressed
LOC_Os09g30190Os.56726.1.S1_x_at10/119+18374695..18378226protein kinase family protein, putative, expressed
LOC_Os09g30200Os.54184.1.S1_at11/119+18380039..18383341expressed protein
LOC_Os09g30210Os.29965.1.S1_at11/119+18386471..18390683expressed protein
LOC_Os09g30220Os.50526.1.S1_at11/119+18390893..18396838NB-ARC domain containing protein, expressed
LOC_Os09g30230Os.51899.1.S1_at11/119+18401209..18403263RXO1 disease resistance protein, putative, expressed
LOC_Os09g30240Os.56193.1.S1_at11/119+18410577..18412162Phosphofructokinase family protein, expressed
LOC_Os09g30250OsAffx.30097.1.S1_x_at11/119+18418804..18421474PA domain containing protein, expressed
LOC_Os09g30250OsAffx.30097.1.S1_at11/119+18418804..18421474PA domain containing protein, expressed
LOC_Os09g30250OsAffx.17117.1.S1_x_at1/119+18418804..18421474PA domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50526.1.S1_at--307--1571Chr09:18391581..18391605 (25 bp)
AGCTAGGTTGCTGGTTCGACACTTC
LOC_Os09g30220
Os.50526.1.S1_at--7--10631Chr09:18391567..18391591 (25 bp)
TTCGACACTTCGACCTGACAACAGT
LOC_Os09g30220
Os.50526.1.S1_at--10--5611Chr09:18391551..18391575 (25 bp)
GACAACAGTGCATAACCATTTCCCT
LOC_Os09g30220
Os.50526.1.S1_at--814--10651Chr09:18391532..18391556 (25 bp)
TTCCCTCTGCTGCAATGTTTGTGTA
LOC_Os09g30220
Os.50526.1.S1_at--70--6871Chr09:18391516..18391540 (25 bp)
GTTTGTGTACACCTGGTTCACTGAA
LOC_Os09g30220
Os.50526.1.S1_at--962--3891Chr09:18391484..18391508 (25 bp)
CTGGAGCTGAATCGGTGCTGCACTT
LOC_Os09g30220
Os.50526.1.S1_at--52--4771Chr09:18391468..18391492 (25 bp)
GCTGCACTTCCACTCTGATTTAGTA
LOC_Os09g30220
Os.50526.1.S1_at--265--8771Chr09:18391240..18391264 (25 bp)
TGTTTCCTCCACTGGATGGTAGCAT
LOC_Os09g30220
Os.50526.1.S1_at--985--2771Chr09:18391189..18391213 (25 bp)
AAGAGATCACGCTACCTGCTGCATG
LOC_Os09g30220
Os.50526.1.S1_at--789--5111Chr09:18391083..18391107 (25 bp)
GCAAATAACGTTCTCGCTCTTTTTT
LOC_Os09g30220
Os.50526.1.S1_at--752--1291Chr09:18390979..18391003 (25 bp)
AGATGCATCAGTCTATCACCATTCA
LOC_Os09g30220
Target Sequence 
AGCTAGGTTGCTGGTTCGACACTTCGACCTGACAACAGTGCATAACCATTTCCCTCTGCTGCAATGTTTGTGTACACCTG
GTTCACTGAAGTAAACACTGGAGCTGAATCGGTGCTGCACTTCCACTCTGATTTAGTATTTGGAAGCAAAGCTTTCTGAG
CAACTCAGAAACTTCTTTCTGCGACCACGCCTTGTTTCCTCCACTGGATGGTAGCATCAAGAATTCCAGATGATTGTTGC
AAGAAGAGATCACGCTACCTGCTGCATGCCGATTTACAGGAAGATAACTACTAAATAGAAGATTGATACATTCAGAAAAT
TATCGTGTTATTATCCCATATTTAGCATTGCAAATAACGTTCTCGCTCTTTTTTTTTTCGCTCCGACCATTTTCTGGTCA
AGATGATTATGCGAGACGAAGTGTAGCGTCCGAAATGGACTACCCATATTTGTAGATGCATCAGTCTATCACCATTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50526.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis