Browse Element(s) Details


OsAffx.30097.1.S1_at

Description tigr:9637.m02699
TID=OsAffx.30097.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=subtilisin-like serine protease AIR3
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3025011/11PA domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g30220Os.50526.1.S1_at11/119+18390893..18396838NB-ARC domain containing protein, expressed
LOC_Os09g30230Os.51899.1.S1_at11/119+18401209..18403263RXO1 disease resistance protein, putative, expressed
LOC_Os09g30240Os.56193.1.S1_at11/119+18410577..18412162Phosphofructokinase family protein, expressed
LOC_Os09g30250OsAffx.30097.1.S1_x_at11/119+18418804..18421474PA domain containing protein, expressed
LOC_Os09g30250OsAffx.30097.1.S1_at11/119+18418804..18421474PA domain containing protein, expressed
LOC_Os09g30250OsAffx.17117.1.S1_x_at1/119+18418804..18421474PA domain containing protein, expressed
LOC_Os09g30260Os.10456.1.S1_at9/119+18426051..18427082expressed protein
LOC_Os09g30270Os.53320.2.S1_x_at11/119+18431161..18434040transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g30270Os.53320.2.S1_s_at11/119+18431161..18434040transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g30270Os.53320.1.S1_s_at11/119+18431161..18434040transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g30270Os.53320.1.S1_at11/119+18431161..18434040transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g30270OsAffx.4931.1.S1_at2/119+18431161..18434040transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g30280Os.5844.1.S1_at11/119+18440085..18444157Glycosyltransferase QUASIMODO1, putative, expressed
LOC_Os09g30290OsAffx.6450.1.S1_at11/119+18444817..18445203hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0009733biological_processresponse to auxin stimulus
GO:0009827biological_processcell wall modification (sensu Magnoliophyta)
GO:0010102biological_processlateral root morphogenesis
GO:0005576cellular_componentextracellular region
GO:0048196cellular_componentextracellular matrix (sensu Magnoliophyta)
GO:0004252molecular_functionserine-type endopeptidase activity
GO:0004289molecular_functionsubtilase activity
GO:0004291molecular_functionsubtilisin activity
GO:0008236molecular_functionserine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30097.1.S1_at--422--891Chr09:18420884..18420908 (25 bp)
AGGCCGATGAGCAACTCGTCGTTCC
LOC_Os09g30250
OsAffx.30097.1.S1_at--447--691Chr09:18420890..18420914 (25 bp)
ATGAGCAACTCGTCGTTCCTCCGGG
LOC_Os09g30250
OsAffx.30097.1.S1_at--901--9651Chr09:18420924..18420948 (25 bp)
TCAGCTACGGCGCAGGGCACGTCCA
LOC_Os09g30250
OsAffx.30097.1.S1_at--900--7151Chr09:18420977..18421001 (25 bp)
GTCTACGACATGAACGACACGGACT
LOC_Os09g30250
OsAffx.30097.1.S1_at--1156--10651Chr09:18421010..18421034 (25 bp)
TTCCTCTGCGCGCTGGGCTACAACT
LOC_Os09g30250
OsAffx.30097.1.S1_at--312--4731Chr09:18421021..18421045 (25 bp)
GCTGGGCTACAACTCGTCGGTGATC
LOC_Os09g30250
OsAffx.30097.1.S1_at--400--9851Chr09:18421028..18421052 (25 bp)
TACAACTCGTCGGTGATCGCCACGT
LOC_Os09g30250
OsAffx.30097.1.S1_at--773--9431Chr09:18421037..18421061 (25 bp)
TCGGTGATCGCCACGTTCATGGCCT
LOC_Os09g30250
OsAffx.30097.1.S1_at--601--7631Chr09:18421350..18421374 (25 bp)
GGGAGTACGAGTTCGGGCGGCTGGT
LOC_Os09g30250
OsAffx.30097.1.S1_at--297--8011Chr09:18421398..18421422 (25 bp)
GGAGGCACCGCGTCAGGAGCCCGTT
LOC_Os09g30250
OsAffx.30097.1.S1_at--511--4231Chr09:18421418..18421442 (25 bp)
CCGTTGGTGGTGAGGGTCGTGGACA
LOC_Os09g30250
Target Sequence 
AGGCCGATGAGCAACTCGTCGTTCCTCCGGGCGACGCCGTTCAGCTACGGCGCAGGGCACGTCCAGCCGGGGCGCGCCGC
CGACCCGGGCCTCGTCTACGACATGAACGACACGGACTACCTCGGCTTCCTCTGCGCGCTGGGCTACAACTCGTCGGTGA
TCGCCACGTTCATGGCCTCCGGCTCCGGCGCCCAGCCGCCGTACGCCTGCCCGCCGGCGCGGCGGCCGGAGGACCTCAAC
TACCCGTCGTTCGCGCTGCCGCACCTGTCGCCGTCCGGCGCCGCGCGCACCGTGACGAGGAGGGTGAGGAACGTCGGCGC
CGCGCCGGCGGCGTACGTGGCGAGCGTCGCCGAGCCCCGCGGCGTGTCGGTGGCCGTGCGGCCGAGCCGGCTGGAGTTCA
CGGCGGCCGGGGAGGAGCTGGAGTTCGCCGTCACGTTCCGGGCCAAGAAAGGGTCGTTCCTGGCCGGGGAGTACGAGTTC
GGGCGGCTGGTCTGGTCGGACGCCGCCGCCGGCGGGAGGCACCGCGTCAGGAGCCCGTTGGTGGTGAGGGTCGTGGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30097.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis