Browse Element(s) Details


Os.56193.1.S1_at

Description gb:AK109585.1
DB_XREF= gi:32994794
TID=Os.56193.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56193 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-137-B02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-137-B02, full insert sequence.
FL= gb:AK109585.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3024011/11Phosphofructokinase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g30210Os.29965.1.S1_at11/119+18386471..18390683expressed protein
LOC_Os09g30220Os.50526.1.S1_at11/119+18390893..18396838NB-ARC domain containing protein, expressed
LOC_Os09g30230Os.51899.1.S1_at11/119+18401209..18403263RXO1 disease resistance protein, putative, expressed
LOC_Os09g30240Os.56193.1.S1_at11/119+18410577..18412162Phosphofructokinase family protein, expressed
LOC_Os09g30250OsAffx.30097.1.S1_x_at11/119+18418804..18421474PA domain containing protein, expressed
LOC_Os09g30250OsAffx.30097.1.S1_at11/119+18418804..18421474PA domain containing protein, expressed
LOC_Os09g30250OsAffx.17117.1.S1_x_at1/119+18418804..18421474PA domain containing protein, expressed
LOC_Os09g30260Os.10456.1.S1_at9/119+18426051..18427082expressed protein
LOC_Os09g30270Os.53320.2.S1_x_at11/119+18431161..18434040transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g30270Os.53320.2.S1_s_at11/119+18431161..18434040transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g30270Os.53320.1.S1_s_at11/119+18431161..18434040transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g30270Os.53320.1.S1_at11/119+18431161..18434040transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g30270OsAffx.4931.1.S1_at2/119+18431161..18434040transposon protein, putative, Mutator sub-class, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006096biological_processglycolysis
GO:0005945cellular_component6-phosphofructokinase complex
GO:0003872molecular_function6-phosphofructokinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56193.1.S1_at--505--8391Chr09:18411787..18411811 (25 bp)
GGCGACAACCTGTACTGCACGCTGC
LOC_Os09g30240
Os.56193.1.S1_at--941--10611Chr09:18411856..18411880 (25 bp)
TTCGTCTCCGGCACGATCAACGGCA
LOC_Os09g30240
Os.56193.1.S1_at--323--6451Chr09:18411870..18411894 (25 bp)
GATCAACGGCAACTACGCCTACATC
LOC_Os09g30240
Os.56193.1.S1_at--307--8051Chr09:18411930..18411954 (25 bp)
GGACACCAAGGACCACAAGTGGGCT
LOC_Os09g30240
Os.56193.1.S1_at--463--2871Chr09:18411946..18411970 (25 bp)
AAGTGGGCTTGGGTCAGGTCCATCA
LOC_Os09g30240
Os.56193.1.S1_at--485--10851Chr09:18411954..18411978 (25 bp)
TTGGGTCAGGTCCATCACCAATCAG
LOC_Os09g30240
Os.56193.1.S1_at--180--1651Chr09:18412018..18412042 (25 bp)
AGCCCACCGTATCTACTTAATCTTT
LOC_Os09g30240
Os.56193.1.S1_at--232--6891Chr09:18412026..18412050 (25 bp)
GTATCTACTTAATCTTTTTGGTTTG
LOC_Os09g30240
Os.56193.1.S1_at--604--5431Chr09:18412055..18412079 (25 bp)
GAACCAGTCAATAATTAGCACTCAA
LOC_Os09g30240
Os.56193.1.S1_at--1146--1491Chr09:18412071..18412095 (25 bp)
AGCACTCAATATGTATACTATCTTA
LOC_Os09g30240
Os.56193.1.S1_at--885--431Chr09:18412090..18412114 (25 bp)
ATCTTATATATTATTCCTTCCGATA
LOC_Os09g30240
Target Sequence 
GGCGACAACCTGTACTGCACGCTGCTGGCGCACGCGGCGATCCACGGCGCCATGGCCGGGTACACCGGCTTCGTCTCCGG
CACGATCAACGGCAACTACGCCTACATCCCCATGGACGAGGTGGCCGAGGCGAAGAACCCCGTGGACACCAAGGACCACA
AGTGGGCTTGGGTCAGGTCCATCACCAATCAGCCCGACTTTATCCGGGCCGGTCCGACGAGCTAGCCCAACAGCCCACCG
TATCTACTTAATCTTTTTGGTTTGGGTTGAACCAGTCAATAATTAGCACTCAATATGTATACTATCTTATATATTATTCC
TTCCGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56193.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis