Browse Element(s) Details


Os.54191.1.S1_at

Description gb:AK102433.1
DB_XREF= gi:32987642
TID=Os.54191.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54191 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033093I12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033093I12, full insert sequence.
FL= gb:AK102433.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4361011/11BRCA1 C Terminus domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g43570Os.21326.1.S1_at11/115+25248678..25256568Protein kinase domain containing protein, expressed
LOC_Os05g43576Os.7615.1.S1_at10/115+25260594..25263053Lipoic acid synthetase, mitochondrial precursor, putative, expressed
LOC_Os05g43582OsAffx.4606.1.S1_x_at11/115+25263615..25266095rRNA methylase family protein, expressed
LOC_Os05g43590OsAffx.15087.1.S1_at11/115+25267428..25268366Serpin family protein
LOC_Os05g43600OsAffx.27293.1.S1_at11/115+25272116..25272558hypothetical protein
LOC_Os05g43610Os.54191.1.S1_at11/115+25274047..25279555BRCA1 C Terminus domain containing protein, expressed
LOC_Os05g43619NANA5+25283734..25284146NA
LOC_Os05g43630Os.52238.1.S1_at6/115+25285221..25286730transposon protein, putative, Pong sub-class
LOC_Os05g43630OsAffx.8898.1.S1_at1/115+25285221..25286730transposon protein, putative, Pong sub-class
LOC_Os05g43640NANA5+25293730..25296862expressed protein
LOC_Os05g43650Os.27836.2.S1_at11/115+25299116..25302326expressed protein
LOC_Os05g43650Os.27836.1.A1_s_at11/115+25299116..25302326expressed protein
LOC_Os05g43650Os.27836.2.S1_s_at11/115+25299116..25302326expressed protein
LOC_Os05g43660NANA5+25304270..25304632hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005622cellular_componentintracellular
GO:0003713molecular_functiontranscription coactivator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54191.1.S1_at--597--2851Chr05:25274959..25274983 (25 bp)
AAGTCGCTACTGATGTTCATGGGAT
LOC_Os05g43610
Os.54191.1.S1_at--119--1331Chr05:25274453..25274477 (25 bp)
AGAGGCTACCTGCAAGATCTCGTGG
LOC_Os05g43610
Os.54191.1.S1_at--1015--5411Chr05:25274400..25274424 (25 bp)
GAAGCCCGTATCAAGAGACCAGCAA
LOC_Os05g43610
Os.54191.1.S1_at--931--1551Chr05:25274374..25274398 (25 bp)
AGCTTCTTGATGACAGCTCTGACCT
LOC_Os05g43610
Os.54191.1.S1_at--369--3811Chr05:25274351..25274375 (25 bp)
CTCCTCATCGTTTACAGCTTCGAGA
LOC_Os05g43610
Os.54191.1.S1_at--541--8851Chr05:25274286..25274310 (25 bp)
TGATCGCAGGCAGGCTGATGCTCAG
LOC_Os05g43610
Os.54191.1.S1_at--156--9591Chr05:25274259..25274283 (25 bp)
TCTTGCTTGCGCTTCTGGAGGCAGA
LOC_Os05g43610
Os.54191.1.S1_at--89--8831Chr05:25274215..25274239 (25 bp)
TGATTGACTCAATTGCAGCCTGCAA
LOC_Os05g43610
Os.54191.1.S1_at--795--5191Chr05:25274194..25274218 (25 bp)
GCAATCTGCAACCTCTTTGAATCTA
LOC_Os05g43610
Os.54191.1.S1_at--722--5231Chr05:25274176..25274200 (25 bp)
GAATCTAGAAGACTGCCTGGTGCCA
LOC_Os05g43610
Os.54191.1.S1_at--511--3891Chr05:25274160..25274184 (25 bp)
CTGGTGCCAAAATGCGAGTTCGATA
LOC_Os05g43610
Target Sequence 
AAGTCGCTACTGATGTTCATGGGATCACTGATGGTCCTAGGTTAGGAAGATGCAGGGTTATTGACAGGCAACCTAAGCTG
TTCGACAGCATGAGGTTCTACCTCCATGGGGACTACACAAAATCCTACAGAGGCTACCTGCAAGATCTCGTGGTTGCAGC
AGGTGGAATAGTTCTTCAGAGGAAGCCCGTATCAAGAGACCAGCAAAAGCTTCTTGATGACAGCTCTGACCTCCTCATCG
TTTACAGCTTCGAGAATCAAGATAGGGCAAAATCCAAGGCCGAAACCAAGGCTGCTGATCGCAGGCAGGCTGATGCTCAG
GCTCTTGCTTGCGCTTCTGGAGGCAGAGTTGTGAGCAGTGCATGGGTGATTGACTCAATTGCAGCCTGCAATCTGCAACC
TCTTTGAATCTAGAAGACTGCCTGGTGCCAAAATGCGAGTTCGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54191.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis