Browse Element(s) Details


Os.54231.1.S1_at

Description gb:AK102656.1
DB_XREF= gi:32987865
TID=Os.54231.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54231 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033101H09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033101H09, full insert sequence.
FL= gb:AK102656.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0401010/11Mpp10 protein, expressed
LOC_Os11g042004/11Mpp10 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g03950OsAffx.19478.2.S1_s_at9/1112+1634122..1641673hypothetical protein
LOC_Os12g03950OsAffx.19478.2.S1_at9/1112+1634122..1641673hypothetical protein
LOC_Os12g03960Os.53234.1.S1_at11/1112+1645425..16469714'-phosphopantetheinyl transferase superfamily protein, expressed
LOC_Os12g03970Os.49766.1.S1_at3/1112+1647300..1649414Calcium-dependent protein kinase, isoform 2, putative
LOC_Os12g03980Os.7704.1.S1_at5/1112+1650422..1651037hypothetical protein
LOC_Os12g03990Os.11628.1.S1_at5/1112+1651554..1654465Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os12g03990Os.13586.1.S1_at4/1112+1651554..1654465Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os12g04000Os.50938.1.S1_at10/1112+1657206..1659737Auxin efflux carrier component 3, putative, expressed
LOC_Os12g04010Os.54231.1.S1_at10/1112+1662836..1667934Mpp10 protein, expressed
LOC_Os12g04020Os.17868.1.S1_at11/1112+1670493..1674168Hydroxymethylglutaryl-CoA lyase, mitochondrial precursor, putative, expressed
LOC_Os12g04030Os.27960.1.S1_a_at10/1112+1673702..1681675HEAT repeat family protein, expressed
LOC_Os12g04030Os.27960.1.S2_at5/1112+1673702..1681675HEAT repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54231.1.S1_at--70--4251NONE
CCGTAGCTGTTTCAGATGCTGCAAT
NONE
Os.54231.1.S1_at--284--9112Chr12:1663630..1663654 (25 bp)
TGCTGCAATGCTTGCTCCTGAAGAA
LOC_Os12g04010
Os.54231.1.S1_at--866--1431Chr12:1663570..1663594 (25 bp)
AGAACTTACACAAGCTGAGCGCAGA
LOC_Os12g04010
Os.54231.1.S1_at--391--10371Chr12:1663191..1663215 (25 bp)
TTTTTACTGTTCAGCATTACCTCCT
LOC_Os12g04010
Os.54231.1.S1_at--610--852Chr12:1663131..1663155 (25 bp)
ATGGCAACGCAGCATTGACAGACAT
LOC_Os12g04010
Os.54231.1.S1_at--1150--7571Chr12:1663066..1663090 (25 bp)
GGGCTCCAATGCTTTTGATCACAGG
LOC_Os12g04010
Os.54231.1.S1_at--952--992Chr12:1663044..1663068 (25 bp)
AGGATCTGTACTCTGGTGGCACAAC
LOC_Os12g04010
Os.54231.1.S1_at--23--3431Chr12:1663020..1663044 (25 bp)
CAGACAGACAGCTGTTCCAGGTCAA
LOC_Os12g04010
Os.54231.1.S1_at--275--12Chr12:1663001..1663025 (25 bp)
GGTCAAAGACCCTGACGTAACCCAT
LOC_Os12g04010
Os.54231.1.S1_at--2--9291Chr12:1662977..1663001 (25 bp)
TCTCCCGTCCCACAAGAAAAGGCGA
LOC_Os12g04010
Os.54231.1.S1_at--671--6831Chr12:1662911..1662935 (25 bp)
GTTTCTTGTTACACTAGTCGTAGTA
LOC_Os12g04010
Target Sequence 
CCGTAGCTGTTTCAGATGCTGCAATGCTTGCTCCTGAAGAAATTTTTGAAGGAAAAGGTGATGTTAAAGAAGAAGCAGAA
CTTACACAAGCTGAGCGCAGAAGAAGAAGAGCTAACAAGAAAAGGAGATATGCAGGATCGCATAAGGAGAGGCCAGCCAA
GATGCAGAAAGATTAACTCAATACTGGGGAAACGCTTACATTATGAACAAGTAGTCAGCCATTTTTACTGTTCAGCATTA
CCTCCTGACCCAAGGATCCATTCATGATGAGTATTGTGCAAATGGCAACGCAGCATTGACAGACATGGAGGCAGAGAGCA
GGCTAGGAAAGGTAGGGTGAAGGGTTGGGCTCCAATGCTTTTGATCACAGGATCTGTACTCTGGTGGCACAACAGACAGA
CAGCTGTTCCAGGTCAAAGACCCTGACGTAACCCATCTCCCGTCCCACAAGAAAAGGCGAGCGAACGTATTGGAATGTGG
GATGGGTAAAAGAAATCTTTTGTTTCTTGTTACACTAGTCGTAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54231.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis