Browse Element(s) Details


Os.54297.1.S1_at

Description gb:AK103173.1
DB_XREF= gi:32988382
TID=Os.54297.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54297 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033121G21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033121G21, full insert sequence.
FL= gb:AK103173.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2151011/11NOL1/NOP2/sun family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g21460Os.27095.1.A1_at8/112+12731905..12735277glutathione S-transferase, putative, expressed
LOC_Os02g21470Os.51469.1.S1_at10/112+12735761..12736170expressed protein
LOC_Os02g21480OsAffx.24368.1.S1_at11/112+12737804..12738814hypothetical protein
LOC_Os02g21490Os.48039.1.A1_at11/112+12741611..12746532Pre-mRNA splicing factor PRP17, putative, expressed
LOC_Os02g21500OsAffx.22314.1.S1_x_at1/112+12751822..12754543hypothetical protein
LOC_Os02g21510Os.54297.1.S1_at11/112+12758247..12762201NOL1/NOP2/sun family protein, putative, expressed
LOC_Os02g21520Os.17608.1.S1_s_at11/112+12765278..12772006chalcone isomerase 3, putative, expressed
LOC_Os02g21520OsAffx.24370.1.S1_at10/112+12765278..12772006chalcone isomerase 3, putative, expressed
LOC_Os02g21530OsAffx.24371.1.S1_at11/112+12777845..12778813expressed protein
LOC_Os02g21540OsAffx.12149.1.S1_at11/112+12780483..12782727hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54297.1.S1_at--13--2071Chr02:12758703..12758727 (25 bp)
ACTTGTTCTCACTTCTTGGTGTGGT
LOC_Os02g21510
Os.54297.1.S1_at--117--2831Chr02:12758619..12758643 (25 bp)
AAGTTCAACAGATCTGCCCTGATGA
LOC_Os02g21510
Os.54297.1.S1_at--932--6551Chr02:12758550..12758574 (25 bp)
GATTCAGCTGACAGTTGGCCTTGCA
LOC_Os02g21510
Os.54297.1.S1_at--1155--8251Chr02:12758520..12758544 (25 bp)
GGCAGCATCTTCAAAACATTGCGAT
LOC_Os02g21510
Os.54297.1.S1_at--1027--9131Chr02:12758501..12758525 (25 bp)
TGCGATTTGATCCTGCAACTTCACA
LOC_Os02g21510
Os.54297.1.S1_at--1148--5131Chr02:12758487..12758511 (25 bp)
GCAACTTCACAAACGAGTGGCCTTT
LOC_Os02g21510
Os.54297.1.S1_at--764--6431Chr02:12758421..12758445 (25 bp)
GATCAGTCTCCATGTAGTTCTAAAG
LOC_Os02g21510
Os.54297.1.S1_at--396--271Chr02:12758379..12758403 (25 bp)
ATATGATTCCATGTGCACGTTAGAT
LOC_Os02g21510
Os.54297.1.S1_at--109--2531Chr02:12758344..12758368 (25 bp)
AACTGTATGCTTCAAATTCCCGGAG
LOC_Os02g21510
Os.54297.1.S1_at--1103--3151Chr02:12758330..12758354 (25 bp)
AATTCCCGGAGCCATCACTGTTATG
LOC_Os02g21510
Os.54297.1.S1_at--252--7771Chr02:12758289..12758313 (25 bp)
GGTGCAAACTGTCAGCTATGCGAAT
LOC_Os02g21510
Target Sequence 
ACTTGTTCTCACTTCTTGGTGTGGTTAAGTGAACCTTACTTATAACAAGATTATTTAGTTTGTCTTGGTTCATTGAAGTT
GTCAAAGTTCAACAGATCTGCCCTGATGACCTTCTGGGATTTCTTTTGCAAACATGCAGAGCTACAAAAGATTGATTCAG
CTGACAGTTGGCCTTGCAGAAGTGGCAGCATCTTCAAAACATTGCGATTTGATCCTGCAACTTCACAAACGAGTGGCCTT
TTTGTTGCCAAGTTCACTAAATTACAGATTTAGAGCATATCTGATCAGTCTCCATGTAGTTCTAAAGATGTGCATTTAAC
TAGTATATGATTCCATGTGCACGTTAGATGTTCACAAGTAACTGTATGCTTCAAATTCCCGGAGCCATCACTGTTATGGT
TTGCGAAGCAAAGTGGTGCAAACTGTCAGCTATGCGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54297.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis