Browse Element(s) Details


Os.5431.1.S1_at

Description gb:AK106447.1
DB_XREF= gi:32991656
TID=Os.5431.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5431 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-103-E04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-103-E04, full insert sequence.
FL= gb:AK106447.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4969011/11protein kinase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g49670OsAffx.4131.1.S1_at11/114+29400272..29402411hypothetical protein
LOC_Os04g49670Os.8681.1.S1_at11/114+29400272..29402411hypothetical protein
LOC_Os04g49680Os.7198.1.S1_at11/114+29405298..29406030expressed protein
LOC_Os04g49690Os.5431.1.S1_at11/114+29417103..29418943protein kinase family protein, putative, expressed
LOC_Os04g49700Os.51709.2.S1_at11/114+29421872..29423292Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g49710NANA4+29432720..29433136hypothetical protein
LOC_Os04g49720OsAffx.26542.1.S1_s_at11/114+29435004..29435635pectinesterase inhibitor domain containing protein, expressed
LOC_Os04g49720OsAffx.26542.1.S1_at11/114+29435004..29435635pectinesterase inhibitor domain containing protein, expressed
LOC_Os04g49730OsAffx.14347.1.S1_at11/114+29437004..29437564pectinesterase inhibitor domain containing protein
LOC_Os04g49739Os.25086.1.A1_at11/114+29439612..29441489purine permease family protein, putative, expressed
LOC_Os04g49748Os.20292.1.S1_s_at11/114+29441895..29443371purine permease family protein, putative, expressed
LOC_Os04g49748Os.20292.1.S1_at11/114+29441895..29443371purine permease family protein, putative, expressed
LOC_Os04g49748OsAffx.9915.1.S1_x_at1/114+29441895..29443371purine permease family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5431.1.S1_at--838--7431Chr04:29418330..29418354 (25 bp)
GTGTACACGGATTACCTCGTCGTCA
LOC_Os04g49690
Os.5431.1.S1_at--703--4791Chr04:29418361..29418385 (25 bp)
GCTCCGGCCAGATGGATCTGCTGGT
LOC_Os04g49690
Os.5431.1.S1_at--991--8031Chr04:29418416..29418440 (25 bp)
GGAGTACTTCGACGCCATACTCAAC
LOC_Os04g49690
Os.5431.1.S1_at--751--7751Chr04:29418449..29418473 (25 bp)
GGTGTTCAAGCTCCACAAGTACGGA
LOC_Os04g49690
Os.5431.1.S1_at--373--2811Chr04:29418465..29418489 (25 bp)
AAGTACGGAACCCACAGCCTTGCCG
LOC_Os04g49690
Os.5431.1.S1_at--940--2711Chr04:29418513..29418537 (25 bp)
AAGCAGGTATTCAGCACGGTGGACG
LOC_Os04g49690
Os.5431.1.S1_at--252--4791Chr04:29418604..29418628 (25 bp)
GCTTCCTTGCGGTGTTGGTTGCCTT
LOC_Os04g49690
Os.5431.1.S1_at--887--5531Chr04:29418677..29418701 (25 bp)
GAAACCGGCTGATGGGCTTCTTGGC
LOC_Os04g49690
Os.5431.1.S1_at--1013--10531Chr04:29418694..29418718 (25 bp)
TTCTTGGCCCAACAAAAGGCTCCGC
LOC_Os04g49690
Os.5431.1.S1_at--788--3311Chr04:29418844..29418868 (25 bp)
CACATGCTTTGGCAATTTTTCAAGG
LOC_Os04g49690
Os.5431.1.S1_at--982--5471Chr04:29418872..29418896 (25 bp)
GAACTATATATTACCTCCCTTAACT
LOC_Os04g49690
Target Sequence 
GTGTACACGGATTACCTCGTCGTCACGGCGGGCTCCGGCCAGATGGATCTGCTGGTGGCGCTGCACCCGGACCTCAGCTC
CAGGCCGGAGTACTTCGACGCCATACTCAACGGCCTCGAGGTGTTCAAGCTCCACAAGTACGGAACCCACAGCCTTGCCG
GGCCAAACCCGCCGATCCCGCTGAAGCAGGTATTCAGCACGGTGGACGGAAGCAGATCGGAGTCCAGGAAGAAGAGCGTC
GTCTGCNCCGCCGTCGGCGNNGTGGCCGCCGGTTGCTTCCTTGCGGTGTTGGTTGCCTTCGCCGTCGCGTGGGCTGTTCG
CAGGAGGCAGAGGAAGGCCGCGGCGGAGAAACCGGCTGATGGGCTTCTTGGCCCAACAAAAGGCTCCGCCCTTTATGACC
CGGTCCAAAAATAAACAGGCCAATTTTTTAAGCCTTTTGTTTTGATAATATTATAGGGTATGTATAGCTATAATTGGGTT
AACATGAAAGAATTATAAATGGGCCCAAAAACATCACATGCTTTGGCAATTTTTCAAGGAGAGAACTATATATTACCTCC
CTTAACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5431.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis