Browse Element(s) Details


OsAffx.9915.1.S1_x_at

Description gb:NM_188464.1
DB_XREF= gi:34904011
TID=OsAffx.9915.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1182011/11expressed protein
LOC_Os04g497481/11purine permease family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g11780OsAffx.11013.2.S1_s_at11/111+6366221..6366868hypothetical protein
LOC_Os01g11790OsAffx.22107.4.S1_at11/111+6374063..6378639GDSL-like Lipase/Acylhydrolase family protein
LOC_Os01g11790OsAffx.22107.2.S1_x_at10/111+6374063..6378639GDSL-like Lipase/Acylhydrolase family protein
LOC_Os01g11790OsAffx.22107.1.S1_x_at6/111+6374063..6378639GDSL-like Lipase/Acylhydrolase family protein
LOC_Os01g11800OsAffx.23206.1.S1_x_at11/111+6379683..6380489hypothetical protein
LOC_Os01g11800OsAffx.26758.1.S1_x_at2/111+6379683..6380489hypothetical protein
LOC_Os01g11810Os.47366.1.A1_x_at11/111+6384493..6388269expressed protein
LOC_Os01g11810Os.3875.1.S1_at10/111+6384493..6388269expressed protein
LOC_Os01g11820OsAffx.9915.1.S1_x_at11/111+6391072..6392469expressed protein
LOC_Os01g11820OsAffx.9915.1.S1_at11/111+6391072..6392469expressed protein
LOC_Os01g11820Os.53712.1.S1_x_at11/111+6391072..6392469expressed protein
LOC_Os01g11820Os.49834.1.S1_at1/111+6391072..6392469expressed protein
LOC_Os01g11830NANA1+6392952..6394096Papain family cysteine protease containing protein, expressed
LOC_Os01g11840Os.8360.1.S1_at1/111+6397692..6398868Papain family cysteine protease containing protein
LOC_Os01g11850OsAffx.25632.1.S1_at4/111+6399795..6407674hypothetical protein
LOC_Os01g11860Os.681.2.S1_x_at11/111+6409588..6416669DJ-1 family protein, expressed
LOC_Os01g11860Os.681.1.S1_x_at10/111+6409588..6416669DJ-1 family protein, expressed
LOC_Os01g11860Os.681.1.S1_at10/111+6409588..6416669DJ-1 family protein, expressed
LOC_Os01g11860OsAffx.25487.1.S1_at1/111+6409588..6416669DJ-1 family protein, expressed
LOC_Os01g11860OsAffx.32054.1.S1_at1/111+6409588..6416669DJ-1 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005345molecular_functionpurine transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9915.1.S1_x_at--731--2773Chr01:6391388..6391412 (25 bp)
AAGAGAAGGTCGTCGTCGTTCGCGT
LOC_Os01g11820
OsAffx.9915.1.S1_x_at--299--9391Chr01:6391403..6391573 (25 bp)
TCGTTCGCGTGCAAGACTTCCATTG
LOC_Os01g11820
OsAffx.9915.1.S1_x_at--847--2751Chr01:6391562..6391585 (24 bp)
AAGACTTCCATTGCTGCTAGACCTG
LOC_Os01g11820
OsAffx.9915.1.S1_x_at--609--71Chr01:6391570..6391594 (25 bp)
ATTGCTGCTAGACCTGTGGACGACG
LOC_Os01g11820
OsAffx.9915.1.S1_x_at--104--8671Chr01:6391584..6391608 (25 bp)
TGTGGACGACGAGCACTAGGCGCAT
LOC_Os01g11820
OsAffx.9915.1.S1_x_at--233--3331Chr01:6391597..6391621 (25 bp)
CACTAGGCGCATCTTGTTGTTTATC
LOC_Os01g11820
OsAffx.9915.1.S1_x_at--923--6813Chr09:10104137..10104161 (25 bp)
GTTTATCCTTTTTCTGAACCTCACA
NONE
OsAffx.9915.1.S1_x_at--501--5031Chr01:6391666..6391808 (25 bp)
GCAGATTACAGGTGTTCGAGGCCAA
LOC_Os01g11820
OsAffx.9915.1.S1_x_at--92--8971Chr01:6391829..6391853 (25 bp)
TGACAAGGGCACGTCTCGAGCAGAT
LOC_Os01g11820
OsAffx.9915.1.S1_x_at--64--9251Chr01:6391921..6391945 (25 bp)
TCCTTGCCAACATTGTGTTCGTCCT
LOC_Os01g11820
OsAffx.9915.1.S1_x_at--859--8631Chr01:6391960..6391984 (25 bp)
TGGGATGCTTCTCGGCCGGATATAC
LOC_Os01g11820
Target Sequence 
AAGAGAAGGTCGTCGTCGTTCGCGTGCAAGACTTCCATTGCTGCTAGACCTGTGGACGACGAGCACTAGGCGCATCTTGT
TGTTTATCCTTTTTCTGAACCTCACAATGAGCAATGCTGCTGAAATTCAGCTGCAGATTACAGGTGTTCGAGGCCAAGAA
GACGTGGTAGCAGAGTCTGACAAGGGCACGTCTCGAGCAGATGCAACTGCGGCGGCCGCGGCGGCGCCGCCGCCTGTGTC
CAGCAAGCGGCTGCGGTGGTGGGCGGTGGTCCTTGCCAACATTGTGTTCGTCCTCGGCGGGCAGAGCGTGGGATGCTTCT
CGGCCGGATATAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9915.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis