Browse Element(s) Details


OsAffx.25487.1.S1_at

Description tigr:9631.m04074
TID=OsAffx.25487.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g118601/11DJ-1 family protein, expressed
LOC_Os11g228501/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g11810Os.47366.1.A1_x_at11/111+6384493..6388269expressed protein
LOC_Os01g11810Os.3875.1.S1_at10/111+6384493..6388269expressed protein
LOC_Os01g11820OsAffx.9915.1.S1_x_at11/111+6391072..6392469expressed protein
LOC_Os01g11820OsAffx.9915.1.S1_at11/111+6391072..6392469expressed protein
LOC_Os01g11820Os.53712.1.S1_x_at11/111+6391072..6392469expressed protein
LOC_Os01g11820Os.49834.1.S1_at1/111+6391072..6392469expressed protein
LOC_Os01g11830NANA1+6392952..6394096Papain family cysteine protease containing protein, expressed
LOC_Os01g11840Os.8360.1.S1_at1/111+6397692..6398868Papain family cysteine protease containing protein
LOC_Os01g11850OsAffx.25632.1.S1_at4/111+6399795..6407674hypothetical protein
LOC_Os01g11860Os.681.2.S1_x_at11/111+6409588..6416669DJ-1 family protein, expressed
LOC_Os01g11860Os.681.1.S1_x_at10/111+6409588..6416669DJ-1 family protein, expressed
LOC_Os01g11860Os.681.1.S1_at10/111+6409588..6416669DJ-1 family protein, expressed
LOC_Os01g11860OsAffx.25487.1.S1_at1/111+6409588..6416669DJ-1 family protein, expressed
LOC_Os01g11860OsAffx.32054.1.S1_at1/111+6409588..6416669DJ-1 family protein, expressed
LOC_Os01g11870OsAffx.29738.4.S1_s_at11/111+6421902..6424761hypothetical protein
LOC_Os01g11870Os.54718.1.S1_at2/111+6421902..6424761hypothetical protein
LOC_Os01g11870Os.57571.1.S2_at1/111+6421902..6424761hypothetical protein
LOC_Os01g11870OsAffx.29738.1.S1_at1/111+6421902..6424761hypothetical protein
LOC_Os01g11880Os.26823.1.S1_at10/111+6429138..64328424-methyl-5-thiazole monophosphate biosynthesis protein, putative, expressed
LOC_Os01g11900Os.15968.1.S1_at11/111+6441121..6452790HhH-GPD superfamily base excision DNA repair protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009228biological_processthiamin biosynthesis
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25487.1.S1_at--1036--56311Chr11:12663679..12663698 (20 bp)
GACACCGGTCACGTCTGACTGGACA
LOC_Os11g22850
OsAffx.25487.1.S1_at--1055--1775Chr03:23503020..23503044 (25 bp)
ACCGGTCACGTCTGACTGGACAGAC
NONE
OsAffx.25487.1.S1_at--1012--9452Chr03:23503030..23503054 (25 bp)
TCTGACTGGACAGACAACCGTGCTC
NONE
OsAffx.25487.1.S1_at--342--4571Chr03:23503194..23503218 (25 bp)
GCGCTGGCCCCGCTCAAGGAAAAGC
NONE
OsAffx.25487.1.S1_at--889--1591Chr03:23503216..23503240 (25 bp)
AGCTGTGGTTTAGCTTCGAGGCGAA
NONE
OsAffx.25487.1.S1_at--845--9991Chr03:23503226..23503250 (25 bp)
TAGCTTCGAGGCGAAGGCACGGGTC
NONE
OsAffx.25487.1.S1_at--235--33512Chr09:22839300..22839322 (23 bp)
CACGGGTCGAGTTCCGGTCAAGGCT
NONE
OsAffx.25487.1.S1_at--398--7211NONE
GTCGAGTTCCGGTCAAGGCTTTGGG
NONE
OsAffx.25487.1.S1_at--63--7555Chr09:20457159..20457384 (25 bp)
GTGGCGGCGTGCGATCTGAATCGGG
NONE
OsAffx.25487.1.S1_at--854--7671NONE
GGGTTAAAATGACATCTCATCCTAT
NONE
OsAffx.25487.1.S1_at--975--9811NONE
TAAAATGACATCTCATCCTATTAAG
NONE
Target Sequence 
GACACCGGTCACGTCTGACTGGACAGACAACCGTGCTCCCATGTCGCATCTGCCTCCGGCGGAGTGGAGGCGAGGGACGG
CGCTGGCCCCGCTCAAGGAAAAGCTGTGGTTTAGCTTCGAGGCGAAGGCACGGGTCGAGTTCCGGTCAAGGCTTTGGGGT
TGGGGTGAGGATAGGAGGGAGGTTGGGGGAGGGGGAAGAGGGGGGTTTCCTCGGGGCTTAGAGGGATGGCCATGGGCGGC
GGAGGACCGGCGGTGGGCGGTGGACTCCGGCGGGCGGCGAGGCGGCGGCGGTGCCGCCGCCGCAGGGATGGAGGAGGGCA
GTGGGCCGGCGTCGGCGGCGGGGGAAAAGCAAGCGAGAGGAGGGGAGGGGGAGAGGGGGAGGGGGCTCGCCGGCGCCGTT
GACCCCTTCCGGCCAGCCGGCGAGGCGGGCGGCGGCGCGGTGGGGCGGTGGCGGCGATGGTGGCGGGGGATCATGCGAGT
GGTGGCGGCGTGCGATCTGAATCGGGGGAGGAGGAGAGGAGTTAGGGTTAAAATGACATCTCATCCTATTAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25487.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis