Browse Element(s) Details


Os.681.1.S1_x_at

Description gb:AK063270.1
DB_XREF= gi:32973288
TID=Os.681.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.681 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0665D10.8 (P0665D10.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-113-B10, full insert sequence.
FL= gb:AK063270.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1186010/11DJ-1 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g11810Os.47366.1.A1_x_at11/111+6384493..6388269expressed protein
LOC_Os01g11810Os.3875.1.S1_at10/111+6384493..6388269expressed protein
LOC_Os01g11820OsAffx.9915.1.S1_x_at11/111+6391072..6392469expressed protein
LOC_Os01g11820OsAffx.9915.1.S1_at11/111+6391072..6392469expressed protein
LOC_Os01g11820Os.53712.1.S1_x_at11/111+6391072..6392469expressed protein
LOC_Os01g11820Os.49834.1.S1_at1/111+6391072..6392469expressed protein
LOC_Os01g11830NANA1+6392952..6394096Papain family cysteine protease containing protein, expressed
LOC_Os01g11840Os.8360.1.S1_at1/111+6397692..6398868Papain family cysteine protease containing protein
LOC_Os01g11850OsAffx.25632.1.S1_at4/111+6399795..6407674hypothetical protein
LOC_Os01g11860Os.681.2.S1_x_at11/111+6409588..6416669DJ-1 family protein, expressed
LOC_Os01g11860Os.681.1.S1_x_at10/111+6409588..6416669DJ-1 family protein, expressed
LOC_Os01g11860Os.681.1.S1_at10/111+6409588..6416669DJ-1 family protein, expressed
LOC_Os01g11860OsAffx.25487.1.S1_at1/111+6409588..6416669DJ-1 family protein, expressed
LOC_Os01g11860OsAffx.32054.1.S1_at1/111+6409588..6416669DJ-1 family protein, expressed
LOC_Os01g11870OsAffx.29738.4.S1_s_at11/111+6421902..6424761hypothetical protein
LOC_Os01g11870Os.54718.1.S1_at2/111+6421902..6424761hypothetical protein
LOC_Os01g11870Os.57571.1.S2_at1/111+6421902..6424761hypothetical protein
LOC_Os01g11870OsAffx.29738.1.S1_at1/111+6421902..6424761hypothetical protein
LOC_Os01g11880Os.26823.1.S1_at10/111+6429138..64328424-methyl-5-thiazole monophosphate biosynthesis protein, putative, expressed
LOC_Os01g11900Os.15968.1.S1_at11/111+6441121..6452790HhH-GPD superfamily base excision DNA repair protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009228biological_processthiamin biosynthesis
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.681.1.S1_x_at--606--491Chr01:6415902..6415926 (25 bp)
ATCGTGGCTGACACGACGCTGGACG
LOC_Os01g11860
Os.681.1.S1_x_at--564--8471Chr01:6416091..6416115 (25 bp)
TGGCGCGAAGACGATGAGCAGCAAC
LOC_Os01g11860
Os.681.1.S1_x_at--611--5451Chr01:6416379..6416403 (25 bp)
GAACGTGATCACGAGCGGAGGCACC
LOC_Os01g11860
Os.681.1.S1_x_at--939--5291Chr01:6416476..6416500 (25 bp)
GAAGGCTTGCTTTTTGCCTGATCGA
LOC_Os01g11860
Os.681.1.S1_x_at--385--4471Chr01:6416491..6416515 (25 bp)
GCCTGATCGATCTTCTGTTGGTTTT
LOC_Os01g11860
Os.681.1.S1_x_at--608--10571Chr01:6416503..6416527 (25 bp)
TTCTGTTGGTTTTAGGTGATCAAAC
LOC_Os01g11860
Os.681.1.S1_x_at--1134--5551Chr01:6416564..6416588 (25 bp)
GAAAGAGATAATTTTCCTTCCAAGA
LOC_Os01g11860
Os.681.1.S1_x_at--952--6051Chr01:6416601..6416625 (25 bp)
GAGTTGTCATTTGTCAAACCATCAA
LOC_Os01g11860
Os.681.1.S1_x_at--1031--2631Chr01:6416617..6416641 (25 bp)
AACCATCAACATTTGTTCTCCCATA
LOC_Os01g11860
Os.681.1.S1_x_at--904--6711Chr01:6416631..6416655 (25 bp)
GTTCTCCCATAAACTTATAAGGGTG
LOC_Os01g11860
Os.681.1.S1_x_at--681--7711Chr01:6416651..6416675 (25 bp)
GGGTGTTTTCTTAATTTATAGCTGA
NONE
Target Sequence 
ATCGTGGCTGACACGACGCTGGACGAGGCGGCTGCNGANNNTCNGANNANNNNCTNNNNNCNNNTCANNCNACNGGGTGG
CACGCNTGGCGCGAAGACGATGAGCAGCAACGAGAAGCTTGTCNCTCTACTGAAGAAGCAGGCGGCGGCGAGCAAGCCCT
ACGGCGCCATTGGCGCCGCGACGGCTCATGTGCTCGAGCCCCACGGTCTGCTCGAGGGCAAGAAAGCGGCGGATCAGGAT
GGCGGCGACGAGTGCGAGAGCAGAGTGGTGGTTGATGGGAACGTGATCACGAGCGGAGGCACCGGCACCGCCATGGAGTT
CGCCGTGGCCGCCGTCGAGAAGCTGCTCGGCCGCGACGTGGCGCAGAGGGTTGCGGAAGGCTTGCTTTTTGCCTGATCGA
TCTTCTGTTGGTTTTAGGTGATCAAACCAATGAAAGTTTTCATAATGCAGATGTGTGATCTGTGAAAGAGATAATTTTCC
TTCCAAGAAANAGACATAAAGAGTTGTCATTTGTCAAACCATCAACATTTGTTCTCCCATAAACTTATAAGGGTGTTTTC
TTAATTTATAGCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.681.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis