Browse Element(s) Details


Os.26823.1.S1_at

Description gb:AK100463.1
DB_XREF= gi:32985672
TID=Os.26823.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.26823 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0665D10.11 (P0665D10.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023092A20, full insert sequence.
FL= gb:AK100463.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1188010/114-methyl-5-thiazole monophosphate biosynthesis protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g11850OsAffx.25632.1.S1_at4/111+6399795..6407674hypothetical protein
LOC_Os01g11860Os.681.2.S1_x_at11/111+6409588..6416669DJ-1 family protein, expressed
LOC_Os01g11860Os.681.1.S1_x_at10/111+6409588..6416669DJ-1 family protein, expressed
LOC_Os01g11860Os.681.1.S1_at10/111+6409588..6416669DJ-1 family protein, expressed
LOC_Os01g11860OsAffx.25487.1.S1_at1/111+6409588..6416669DJ-1 family protein, expressed
LOC_Os01g11860OsAffx.32054.1.S1_at1/111+6409588..6416669DJ-1 family protein, expressed
LOC_Os01g11870OsAffx.29738.4.S1_s_at11/111+6421902..6424761hypothetical protein
LOC_Os01g11870Os.54718.1.S1_at2/111+6421902..6424761hypothetical protein
LOC_Os01g11870Os.57571.1.S2_at1/111+6421902..6424761hypothetical protein
LOC_Os01g11870OsAffx.29738.1.S1_at1/111+6421902..6424761hypothetical protein
LOC_Os01g11880Os.26823.1.S1_at10/111+6429138..64328424-methyl-5-thiazole monophosphate biosynthesis protein, putative, expressed
LOC_Os01g11900Os.15968.1.S1_at11/111+6441121..6452790HhH-GPD superfamily base excision DNA repair protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009228biological_processthiamin biosynthesis
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26823.1.S1_at--673--10331Chr01:6432288..6432312 (25 bp)
TTTATGCATCAGGTGCCTGTCACCT
LOC_Os01g11880
Os.26823.1.S1_at--378--1771Chr01:6432309..6432333 (25 bp)
ACCTGTGAGTGATGCTTCTGTGAAT
LOC_Os01g11880
Os.26823.1.S1_at--584--2531Chr01:6432334..6432358 (25 bp)
AACTACTTATGCTGCTTTCCTAGGA
LOC_Os01g11880
Os.26823.1.S1_at--40--2331Chr01:6432437..6432461 (25 bp)
AAAGAGTCGTCGTTGTTAGATTTCG
LOC_Os01g11880
Os.26823.1.S1_at--636--6531Chr01:6432455..6432479 (25 bp)
GATTTCGGTGAGTTTACGCTGTCTT
LOC_Os01g11880
Os.26823.1.S1_at--700--9931Chr01:6432469..6432493 (25 bp)
TACGCTGTCTTACAGTTACCTGGAT
LOC_Os01g11880
Os.26823.1.S1_at--508--6831Chr01:6432508..6432532 (25 bp)
GTTTCTGAGGCCCAAGGCTTGCAGA
LOC_Os01g11880
Os.26823.1.S1_at--325--10351Chr01:6432550..6432574 (25 bp)
TTTAGTTCTCAAAGGCACAGGATCT
LOC_Os01g11880
Os.26823.1.S1_at--32--931Chr01:6432651..6432675 (25 bp)
AGGAACCTGTTGAGACTTTGGAATC
LOC_Os01g11880
Os.26823.1.S1_at--491--5252Chr01:6456303..6456327 (25 bp)
GAATCTGTTGCATCAATCTTTTCGA
NONE
Os.26823.1.S1_at--850--10231Chr01:6432858..6432882 (25 bp)
TTTGGCTCTCAATGCATTATATGCT
NONE
Target Sequence 
TTTATGCATCAGGTGCCTGTCACCTGTGAGTGATGCTTCTGTGAATAACTACTTATGCTGCTTTCCTAGGAATGCATAAT
ATAAGCCTATAGCAGCATGTGGCAATCCATGTGAATGAGGAATAAATGTACATTATGAGTATCATGTGTAAAGAGTCGTC
GTTGTTAGATTTCGGTGAGTTTACGCTGTCTTACAGTTACCTGGATAGATNTTGANNCTTGTTTCTGAGGCCCAAGGCTT
GCAGAAAAATGGCATGGCNATGTTTAGTTCTCAAAGGCACAGGATCTGAATCCTATCATGTGGAACTAATACGATCTGAG
ATAGAGGGACTGCATTGAGAACCTGTTTGATGGATAGAAAGAAAGGAACCTGTTGAGACTTTGGAATCTGTTGCATCAAT
CTTTTCGAATGTTTAGCAAAATACTTTCTATTATGATTGTCACTTTCACATCATCATCAGGAGGACTAATGTGTGATTGA
AACGACATGAGTGTAATGCACTAGGAAAGTGCATCTTTNTGTGTCTTGAAAACNGAAAATTGNGCCATGNCATAGTAATT
CTGTGCNTTTTTTTGGCTCTCAATGCATTATATGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26823.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis