Browse Element(s) Details


OsAffx.29738.4.S1_s_at

Description tigr:9630.m02003
TID=OsAffx.29738.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2092011/11hypothetical protein
LOC_Os01g1187011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g20860Os.9586.1.S1_at11/112+12335373..12338628ATP11 protein, expressed
LOC_Os02g20870Os.49858.1.S1_at11/112+12339725..12348525RNA helicase, putative, expressed
LOC_Os02g20870Os.38745.2.S1_at2/112+12339725..12348525RNA helicase, putative, expressed
LOC_Os02g20880OsAffx.24948.1.S1_at11/112+12348939..12349757hypothetical protein
LOC_Os02g20880OsAffx.19134.1.S1_at1/112+12348939..12349757hypothetical protein
LOC_Os02g20890OsAffx.8512.1.S1_at9/112+12350041..12352794transposon protein, putative, Mutator sub-class, expressed
LOC_Os02g20890Os.53378.1.S1_s_at1/112+12350041..12352794transposon protein, putative, Mutator sub-class, expressed
LOC_Os02g20900OsAffx.24354.1.S1_at11/112+12353884..12354667hypothetical protein
LOC_Os02g20920OsAffx.29738.4.S1_s_at11/112+12360551..12362631hypothetical protein
LOC_Os02g20920Os.54718.1.S1_at2/112+12360551..12362631hypothetical protein
LOC_Os02g20920Os.57571.1.S2_at1/112+12360551..12362631hypothetical protein
LOC_Os02g20920OsAffx.29738.1.S1_at1/112+12360551..12362631hypothetical protein
LOC_Os02g20930Os.11996.1.S1_at11/112+12365584..12375312Apoptosis inhibitory protein 5 containing protein, expressed
LOC_Os02g20940OsAffx.2704.1.S1_s_at11/112+12382079..12383625CHCH domain containing protein, expressed
LOC_Os02g20950Os.10252.1.S1_s_at11/112+12387114..12394238expressed protein
LOC_Os02g20950OsAffx.24356.1.S1_at10/112+12387114..12394238expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29738.4.S1_s_at--852--4872Chr01:6423941..6423965 (25 bp)
GCTATCAAGTTGCTTTCTTGTGTGC
LOC_Os01g11870
OsAffx.29738.4.S1_s_at--210--9592Chr01:6423956..6423980 (25 bp)
TCTTGTGTGCTTTTGATGAAGTCGC
LOC_Os01g11870
OsAffx.29738.4.S1_s_at--45--5332Chr01:6423973..6423997 (25 bp)
GAAGTCGCAGACTTTTATCGGTCCC
LOC_Os01g11870
OsAffx.29738.4.S1_s_at--1009--5692Chr01:6423982..6424006 (25 bp)
GACTTTTATCGGTCCCAGCTTATCA
LOC_Os01g11870
OsAffx.29738.4.S1_s_at--1011--3392Chr01:6423997..6424021 (25 bp)
CAGCTTATCACAAGTGAAACTCGAC
LOC_Os01g11870
OsAffx.29738.4.S1_s_at--239--8272Chr01:6424024..6424048 (25 bp)
GGCATAGTTGTTGCCACGGCATTGG
LOC_Os01g11870
OsAffx.29738.4.S1_s_at--188--4372Chr01:6424037..6424061 (25 bp)
CCACGGCATTGGAGGTTGATAAAGC
LOC_Os01g11870
OsAffx.29738.4.S1_s_at--425--2352Chr01:6424057..6424164 (25 bp)
AAAGCTTCAAATTGCCTATCCACCA
LOC_Os01g11870
OsAffx.29738.4.S1_s_at--998--3152Chr01:6424150..6424173 (24 bp)
AATTGCCTATCCACCATAGCTGCAA
LOC_Os01g11870
OsAffx.29738.4.S1_s_at--1141--732Chr01:6424182..6424206 (25 bp)
ATGTTTTTGCACAATCGTGACTACC
LOC_Os01g11870
OsAffx.29738.4.S1_s_at--435--10272Chr01:6424187..6424211 (25 bp)
TTTGCACAATCGTGACTACCAGCGG
LOC_Os01g11870
Target Sequence 
GCTATCAAGTTGCTTTCTTGTGTGCTTTTGATGAAGTCGCAGACTTTTATCGGTCCCAGCTTATCACAAGTGAAACTCGA
CATGGCATAGTTGTTGCCACGGCATTGGAGGTTGATAAAGCTTCAAATTGCCTATCCACCATAGCTGCAACTACAATAAT
GTTTTTGCACAATCGTGACTACCAGCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29738.4.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis