Browse Element(s) Details


Os.11996.1.S1_at

Description gb:AK073608.1
DB_XREF= gi:32983631
TID=Os.11996.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11996 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033050C22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033050C22, full insert sequence.
FL= gb:AK073608.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2093011/11Apoptosis inhibitory protein 5 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g20870Os.49858.1.S1_at11/112+12339725..12348525RNA helicase, putative, expressed
LOC_Os02g20870Os.38745.2.S1_at2/112+12339725..12348525RNA helicase, putative, expressed
LOC_Os02g20880OsAffx.24948.1.S1_at11/112+12348939..12349757hypothetical protein
LOC_Os02g20880OsAffx.19134.1.S1_at1/112+12348939..12349757hypothetical protein
LOC_Os02g20890OsAffx.8512.1.S1_at9/112+12350041..12352794transposon protein, putative, Mutator sub-class, expressed
LOC_Os02g20890Os.53378.1.S1_s_at1/112+12350041..12352794transposon protein, putative, Mutator sub-class, expressed
LOC_Os02g20900OsAffx.24354.1.S1_at11/112+12353884..12354667hypothetical protein
LOC_Os02g20920OsAffx.29738.4.S1_s_at11/112+12360551..12362631hypothetical protein
LOC_Os02g20920Os.54718.1.S1_at2/112+12360551..12362631hypothetical protein
LOC_Os02g20920Os.57571.1.S2_at1/112+12360551..12362631hypothetical protein
LOC_Os02g20920OsAffx.29738.1.S1_at1/112+12360551..12362631hypothetical protein
LOC_Os02g20930Os.11996.1.S1_at11/112+12365584..12375312Apoptosis inhibitory protein 5 containing protein, expressed
LOC_Os02g20940OsAffx.2704.1.S1_s_at11/112+12382079..12383625CHCH domain containing protein, expressed
LOC_Os02g20950Os.10252.1.S1_s_at11/112+12387114..12394238expressed protein
LOC_Os02g20950OsAffx.24356.1.S1_at10/112+12387114..12394238expressed protein
LOC_Os02g20960OsAffx.12140.1.S1_at10/112+12396205..12397782expressed protein
LOC_Os02g20970Os.33238.2.S1_at11/112+12398104..12405414C2 domain containing protein, expressed
LOC_Os02g20970Os.33238.1.S1_x_at11/112+12398104..12405414C2 domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006916biological_processanti-apoptosis
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11996.1.S1_at--138--5951Chr02:12374665..12374689 (25 bp)
GAGCAGCCCGGAATCAACTTGTGAA
LOC_Os02g20930
Os.11996.1.S1_at--71--3391Chr02:12374690..12374714 (25 bp)
CAGAGCTTTTGAAGGGTTATCCCGT
LOC_Os02g20930
Os.11996.1.S1_at--776--6151Chr02:12374786..12374810 (25 bp)
GTTGGAAATCCCTGCAATCTGATGG
LOC_Os02g20930
Os.11996.1.S1_at--1078--3391Chr02:12374821..12374845 (25 bp)
CAGCTTTCTGCTTTGATTTGAGGTA
LOC_Os02g20930
Os.11996.1.S1_at--404--6471Chr02:12374856..12374880 (25 bp)
GATAAGCTTTTCTGTATGCAGCAAA
LOC_Os02g20930
Os.11996.1.S1_at--410--6491Chr02:12374892..12374916 (25 bp)
GATAGCCCGTGAAGGCATGCTCAAT
LOC_Os02g20930
Os.11996.1.S1_at--824--10291Chr02:12374972..12374996 (25 bp)
TTTAGACCCTAGTCGTGGAGGTTCA
LOC_Os02g20930
Os.11996.1.S1_at--175--8551Chr02:12375003..12375027 (25 bp)
TGGAGTGTATGTACGCCCTAGTTCA
LOC_Os02g20930
Os.11996.1.S1_at--162--2091Chr02:12375031..12375055 (25 bp)
ACATCCCTGACCGTTTGTTAGTTGA
LOC_Os02g20930
Os.11996.1.S1_at--895--6771Chr02:12375047..12375071 (25 bp)
GTTAGTTGACCAGTTCTACTTGTTT
LOC_Os02g20930
Os.11996.1.S1_at--557--3731Chr02:12375062..12375086 (25 bp)
CTACTTGTTTTGGTGGTTCGATGAA
LOC_Os02g20930
Target Sequence 
GAGCAGCCCGGAATCAACTTGTGAACAGAGCTTTTGAAGGGTTATCCCGTGGTGNTAGAGGGAGTGGAAGAGGCCGGGGC
AGGGGAGGCCGGGGAAGAGGATGGGGCTACCGCTGAGAATAGTTGGAAATCCCTGCAATCTGATGGGAGAATAGATCAGC
TTTCTGCTTTGATTTGAGGTACTTCTCAGGAGATAAGCTTTTCTGTATGCAGCAAAATGGGATTGGTGATAGCCCGTGAA
GGCATGCTCAATTGCTGAATGCATACAGAAAGCTCATATGATGGATGCTTGAGTATATCGATGATTTTTTAGACCCTAGT
CGTGGAGGTTCAAGAATGTGGAGTGTATGTACGCCCTAGTTCATTTACATCCCTGACCGTTTGTTAGTTGACCAGTTCTA
CTTGTTTTGGTGGTTCGATGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11996.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis