Browse Element(s) Details


OsAffx.2704.1.S1_s_at

Description tigr:9630.m02005
TID=OsAffx.2704.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to 34550-33586
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2094011/11CHCH domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g20920OsAffx.29738.4.S1_s_at11/112+12360551..12362631hypothetical protein
LOC_Os02g20920Os.54718.1.S1_at2/112+12360551..12362631hypothetical protein
LOC_Os02g20920Os.57571.1.S2_at1/112+12360551..12362631hypothetical protein
LOC_Os02g20920OsAffx.29738.1.S1_at1/112+12360551..12362631hypothetical protein
LOC_Os02g20930Os.11996.1.S1_at11/112+12365584..12375312Apoptosis inhibitory protein 5 containing protein, expressed
LOC_Os02g20940OsAffx.2704.1.S1_s_at11/112+12382079..12383625CHCH domain containing protein, expressed
LOC_Os02g20950Os.10252.1.S1_s_at11/112+12387114..12394238expressed protein
LOC_Os02g20950OsAffx.24356.1.S1_at10/112+12387114..12394238expressed protein
LOC_Os02g20960OsAffx.12140.1.S1_at10/112+12396205..12397782expressed protein
LOC_Os02g20970Os.33238.2.S1_at11/112+12398104..12405414C2 domain containing protein, expressed
LOC_Os02g20970Os.33238.1.S1_x_at11/112+12398104..12405414C2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2704.1.S1_s_at--300--6191Chr02:12383387..12383411 (25 bp)
GAGGCCTGTGCCTCCCGAAAAGGGA
LOC_Os02g20940
OsAffx.2704.1.S1_s_at--270--2311Chr02:12383405..12383429 (25 bp)
AAAGGGAGTGTTCCCACTGGATCAC
LOC_Os02g20940
OsAffx.2704.1.S1_s_at--1125--6111Chr02:12383410..12383434 (25 bp)
GAGTGTTCCCACTGGATCACTTGCA
LOC_Os02g20940
OsAffx.2704.1.S1_s_at--966--10631Chr02:12383415..12383439 (25 bp)
TTCCCACTGGATCACTTGCACGAGT
LOC_Os02g20940
OsAffx.2704.1.S1_s_at--533--8571Chr02:12383422..12383446 (25 bp)
TGGATCACTTGCACGAGTGTGACTT
LOC_Os02g20940
OsAffx.2704.1.S1_s_at--305--2071Chr02:12383428..12383448 (21 bp)
ACTTGCACGAGTGTGACTTGGAGAA
LOC_Os02g20940
OsAffx.2704.1.S1_s_at--571--5571Chr02:12383529..12383553 (25 bp)
GAAAGATTATCTTGCGTGCCTTAAA
LOC_Os02g20940
OsAffx.2704.1.S1_s_at--305--431Chr02:12383537..12383561 (25 bp)
ATCTTGCGTGCCTTAAATCAACTGG
LOC_Os02g20940
OsAffx.2704.1.S1_s_at--663--10711Chr02:12383540..12383564 (25 bp)
TTGCGTGCCTTAAATCAACTGGATT
LOC_Os02g20940
OsAffx.2704.1.S1_s_at--57--3091Chr02:12383552..12383576 (25 bp)
AATCAACTGGATTTCAGTCCGAAAA
LOC_Os02g20940
OsAffx.2704.1.S1_s_at--348--7251Chr02:12383568..12383592 (25 bp)
GTCCGAAAAATGTCGGCAGTTCTCG
LOC_Os02g20940
Target Sequence 
GAGGCCTGTGCCTCCCGAAAAGGGAGTGTTCCCACTGGATCACTTGCACGAGTGTGACTTGGAGAAGAAAGATTATCTTG
CGTGCCTTAAATCAACTGGATTTCAGTCCGAAAAATGTCGGCAGTTCTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2704.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis