Browse Element(s) Details


Os.33238.2.S1_at

Description gb:AK101258.1
DB_XREF= gi:32986467
TID=Os.33238.2
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.33238 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033032H14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033032H14, full insert sequence.
FL= gb:AK101258.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2097011/11C2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g20930Os.11996.1.S1_at11/112+12365584..12375312Apoptosis inhibitory protein 5 containing protein, expressed
LOC_Os02g20940OsAffx.2704.1.S1_s_at11/112+12382079..12383625CHCH domain containing protein, expressed
LOC_Os02g20950Os.10252.1.S1_s_at11/112+12387114..12394238expressed protein
LOC_Os02g20950OsAffx.24356.1.S1_at10/112+12387114..12394238expressed protein
LOC_Os02g20960OsAffx.12140.1.S1_at10/112+12396205..12397782expressed protein
LOC_Os02g20970Os.33238.2.S1_at11/112+12398104..12405414C2 domain containing protein, expressed
LOC_Os02g20970Os.33238.1.S1_x_at11/112+12398104..12405414C2 domain containing protein, expressed
LOC_Os02g20980OsAffx.3097.1.S1_s_at9/112+12414560..12421423hypothetical protein
LOC_Os02g20980Os.12010.1.S1_at7/112+12414560..12421423hypothetical protein
LOC_Os02g20980Os.12010.1.S1_x_at6/112+12414560..12421423hypothetical protein
LOC_Os02g20980OsAffx.3097.1.S1_x_at3/112+12414560..12421423hypothetical protein
LOC_Os02g20980Os.15211.1.S1_at3/112+12414560..12421423hypothetical protein
LOC_Os02g20980Os.43072.1.S1_x_at2/112+12414560..12421423hypothetical protein
LOC_Os02g20980Os.43072.1.S1_at2/112+12414560..12421423hypothetical protein
LOC_Os02g20990NANA2+12428182..12428559hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33238.2.S1_at--1033--5651Chr02:12398539..12398563 (25 bp)
GACATAGACCCTTCACAAGTTGAGA
LOC_Os02g20970
Os.33238.2.S1_at--907--2811Chr02:12398523..12398547 (25 bp)
AAGTTGAGAACGACATCCCCGATTC
LOC_Os02g20970
Os.33238.2.S1_at--1114--6551Chr02:12398503..12398527 (25 bp)
GATTCAACGGCAATTGACCCTTTGA
LOC_Os02g20970
Os.33238.2.S1_at--45--6731Chr02:12398387..12398411 (25 bp)
GTTCTGCTATTTTTGGCGGTCCTCG
LOC_Os02g20970
Os.33238.2.S1_at--1064--9411Chr02:12398365..12398389 (25 bp)
TCGTGCTGTTGGGACTGTTCATGTA
LOC_Os02g20970
Os.33238.2.S1_at--260--3111Chr02:12398320..12398344 (25 bp)
AATAGTCTGATAGCCTCCTGACAGC
LOC_Os02g20970
Os.33238.2.S1_at--211--10051Chr02:12398277..12398301 (25 bp)
TAGTCCGTTTGGTTGGTTGAGTCCT
LOC_Os02g20970
Os.33238.2.S1_at--497--1731Chr02:12398245..12398269 (25 bp)
ACCTGACGACCGATGTTTTTCTTGT
LOC_Os02g20970
Os.33238.2.S1_at--60--8171Chr02:12398205..12398229 (25 bp)
GGAACAATACCTCTGTACATGTCGT
LOC_Os02g20970
Os.33238.2.S1_at--343--7031Chr02:12398191..12398215 (25 bp)
GTACATGTCGTATGCAGACTGTCTA
LOC_Os02g20970
Os.33238.2.S1_at--362--7151Chr02:12398171..12398195 (25 bp)
GTCTAAGCTGTTTGCTTCTTGGACA
LOC_Os02g20970
Target Sequence 
GACATAGACCCTTCACAAGTTGAGAACGACATCCCCGATTCAACGGCAATTGACCCTTTGAAGGTTGATTCTAATGTGGC
CAACAACATTGTGGTTGATGCACTAGAGTATGCATCTGAATCTGATGCGAAGGACAAACCACAGTGAAATGTGTTCTGCT
ATTTTTGGCGGTCCTCGTGCTGTTGGGACTGTTCATGTAGGCAGGATACTAGGTAGCAAAATAGTCTGATAGCCTCCTGA
CAGCAAGCGAAGGTTGACAGTATAGTCCGTTTGGTTGGTTGAGTCCTCCATCTTACCTGACGACCGATGTTTTTCTTGTA
TTATAGATGCTCAAGGAACAATACCTCTGTACATGTCGTATGCAGACTGTCTAAGCTGTTTGCTTCTTGGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33238.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis