Browse Element(s) Details


Os.10252.1.S1_s_at

Description gb:AK120143.1
DB_XREF= gi:37989766
TID=Os.10252.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10252 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013028F03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013028F03, full insert sequence.
FL= gb:AK120143.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2095011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g20920OsAffx.29738.4.S1_s_at11/112+12360551..12362631hypothetical protein
LOC_Os02g20920Os.54718.1.S1_at2/112+12360551..12362631hypothetical protein
LOC_Os02g20920Os.57571.1.S2_at1/112+12360551..12362631hypothetical protein
LOC_Os02g20920OsAffx.29738.1.S1_at1/112+12360551..12362631hypothetical protein
LOC_Os02g20930Os.11996.1.S1_at11/112+12365584..12375312Apoptosis inhibitory protein 5 containing protein, expressed
LOC_Os02g20940OsAffx.2704.1.S1_s_at11/112+12382079..12383625CHCH domain containing protein, expressed
LOC_Os02g20950Os.10252.1.S1_s_at11/112+12387114..12394238expressed protein
LOC_Os02g20950OsAffx.24356.1.S1_at10/112+12387114..12394238expressed protein
LOC_Os02g20960OsAffx.12140.1.S1_at10/112+12396205..12397782expressed protein
LOC_Os02g20970Os.33238.2.S1_at11/112+12398104..12405414C2 domain containing protein, expressed
LOC_Os02g20970Os.33238.1.S1_x_at11/112+12398104..12405414C2 domain containing protein, expressed
LOC_Os02g20980OsAffx.3097.1.S1_s_at9/112+12414560..12421423hypothetical protein
LOC_Os02g20980Os.12010.1.S1_at7/112+12414560..12421423hypothetical protein
LOC_Os02g20980Os.12010.1.S1_x_at6/112+12414560..12421423hypothetical protein
LOC_Os02g20980OsAffx.3097.1.S1_x_at3/112+12414560..12421423hypothetical protein
LOC_Os02g20980Os.15211.1.S1_at3/112+12414560..12421423hypothetical protein
LOC_Os02g20980Os.43072.1.S1_x_at2/112+12414560..12421423hypothetical protein
LOC_Os02g20980Os.43072.1.S1_at2/112+12414560..12421423hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10252.1.S1_s_at--274--7371Chr02:12389747..12389771 (25 bp)
GTGAAAGCTCCTTGGCTAAAGACAA
LOC_Os02g20950
Os.10252.1.S1_s_at--855--10171Chr02:12389791..12389815 (25 bp)
TATAATAGCGCAGTTTCTTCACCCA
LOC_Os02g20950
Os.10252.1.S1_s_at--628--7691Chr02:12389835..12389859 (25 bp)
GGGTAGTCTGGTCACTAACATTCTA
LOC_Os02g20950
Os.10252.1.S1_s_at--918--9811Chr02:12389850..12389874 (25 bp)
TAACATTCTAGGTGCAGATCTGGAG
LOC_Os02g20950
Os.10252.1.S1_s_at--119--6291Chr02:12389881..12389905 (25 bp)
GATGTTGGACCAGCAATTCAGTTAT
LOC_Os02g20950
Os.10252.1.S1_s_at--624--8111Chr02:12390439..12390463 (25 bp)
GGAAGGGCCAACCTGAACAAATTCT
LOC_Os02g20950
Os.10252.1.S1_s_at--1051--3091Chr02:12390494..12390518 (25 bp)
AATAGTACCCGAGCTTATTGCTGGC
LOC_Os02g20950
Os.10252.1.S1_s_at--506--10671Chr02:12390511..12390535 (25 bp)
TTGCTGGCTTTCACAAAAACTTGCT
LOC_Os02g20950
Os.10252.1.S1_s_at--1057--2411Chr02:12390526..12390550 (25 bp)
AAAACTTGCTATCGGTCATCAAAGA
LOC_Os02g20950
Os.10252.1.S1_s_at--1140--6091Chr02:12390783..12390807 (25 bp)
GAGTCCTTGTAAGCTGCATGTACTT
LOC_Os02g20950
Os.10252.1.S1_s_at--404--3131Chr02:12390808..12390832 (25 bp)
AATTTACTTTGCGATGAGGCCCTCT
LOC_Os02g20950
Target Sequence 
GTGAAAGCTCCTTGGCTAAAGACAAAAATGGATCTATATTGGGCTATAATAGCGCAGTTTCTTCACCCAATAAAAAAGTG
CTTCCAAGGGGTAGTCTGGTCACTAACATTCTAGGTGCAGATCTGGAGGTGAAAGATGTTGGACCAGCAATTCAGTTATA
CGAGTTCTGCAATTGATTTGGCGAGATTTTCCAGATAAGGAAGGGCCAACCTGAACAAATTCTACAAGACATAGCAAGAG
ATCAAGAGGTTGAAATAGTACCCGAGCTTATTGCTGGCTTTCACAAAAACTTGCTATCGGTCATCAAAGAAGACAGAGGG
GAGAAGAATTCAATCTACATAACAAATGGAGATGCATGGTTAAATGATTTAGGTGCATATATCAATGAATTGGCATTTAT
GTCAAAGGAATTGCATCTTGAATTTGTAAACAAGGGAACATTGGGATACAACAAGCTGAGTCCTTGTAAGCTGCATGTAC
TTAATTTACTTTGCGATGAGGCCCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10252.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis