Browse Element(s) Details


OsAffx.29738.1.S1_at

Description gb:NM_188469.1
DB_XREF= gi:34904021
GEN=P0665D10.9
TID=OsAffx.29738.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0665D10.9 (P0665D10.9), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g118701/11hypothetical protein
LOC_Os02g209201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g11840Os.8360.1.S1_at1/111+6397692..6398868Papain family cysteine protease containing protein
LOC_Os01g11850OsAffx.25632.1.S1_at4/111+6399795..6407674hypothetical protein
LOC_Os01g11860Os.681.2.S1_x_at11/111+6409588..6416669DJ-1 family protein, expressed
LOC_Os01g11860Os.681.1.S1_x_at10/111+6409588..6416669DJ-1 family protein, expressed
LOC_Os01g11860Os.681.1.S1_at10/111+6409588..6416669DJ-1 family protein, expressed
LOC_Os01g11860OsAffx.25487.1.S1_at1/111+6409588..6416669DJ-1 family protein, expressed
LOC_Os01g11860OsAffx.32054.1.S1_at1/111+6409588..6416669DJ-1 family protein, expressed
LOC_Os01g11870OsAffx.29738.4.S1_s_at11/111+6421902..6424761hypothetical protein
LOC_Os01g11870Os.54718.1.S1_at2/111+6421902..6424761hypothetical protein
LOC_Os01g11870Os.57571.1.S2_at1/111+6421902..6424761hypothetical protein
LOC_Os01g11870OsAffx.29738.1.S1_at1/111+6421902..6424761hypothetical protein
LOC_Os01g11880Os.26823.1.S1_at10/111+6429138..64328424-methyl-5-thiazole monophosphate biosynthesis protein, putative, expressed
LOC_Os01g11900Os.15968.1.S1_at11/111+6441121..6452790HhH-GPD superfamily base excision DNA repair protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29738.1.S1_at--951--2572Chr01:6420956..6420980 (25 bp)
AACGGAGCAATCTCCTCCTCAATTC
NONE
OsAffx.29738.1.S1_at--259--472Chr01:6420965..6420989 (25 bp)
ATCTCCTCCTCAATTCTCGCAAATG
NONE
OsAffx.29738.1.S1_at--883--412Chr01:6421001..6421025 (25 bp)
ATCATTTCCTGATTACTCCCCCAAT
NONE
OsAffx.29738.1.S1_at--11--3591Chr01:6421037..6421061 (25 bp)
CTTCCCCGGGATTAAACATTGCACA
NONE
OsAffx.29738.1.S1_at--1120--9271Chr01:6421039..6421063 (25 bp)
TCCCCGGGATTAAACATTGCACATT
NONE
OsAffx.29738.1.S1_at--398--10491Chr01:6421048..6421072 (25 bp)
TTAAACATTGCACATTCGGCGCCGT
NONE
OsAffx.29738.1.S1_at--727--4191Chr01:6421074..6421098 (25 bp)
CCCTGCACCACCATGCGATGGAGAG
NONE
OsAffx.29738.1.S1_at--1052--4052Chr01:6421089..6421152 (25 bp)
CGATGGAGAGATCGCTTCAGCTATC
NONE
OsAffx.29738.1.S1_at--962--8051NONE
GGAGAGATCGCTTCAGCTATCAAGT
NONE
OsAffx.29738.1.S1_at--1083--6031NONE
GAGATCGCTTCAGCTATCAAGTTGC
NONE
OsAffx.29738.1.S1_at--153--5712Chr01:6424200..6424390 (25 bp)
GACTACCAGCGGAAGCAAGAGCTAC
LOC_Os01g11870
Target Sequence 
AACGGAGCAATCTCCTCCTCAATTCTCGCAAATGTCGCCCCCATCATCATTTCCTGATTACTCCCCCAATTCATGCTCCC
TCTTCCCCGGGATTAAACATTGCACATTCGGCGCCGTCCCCTGCACCACCATGCGATGGAGAGATCGCTTCAGCTATCAA
GTTGCTTTCTTGTGTGCTTTTGATGAAGTCGCAGACTTTTATCGGTCCCAGCTTATCACAAGTGAAACTCGACGTGGCAT
AGTTGTTGCCACGGCATTGGAGGTTGATAAAGCTTCAAATTGCCTATCCACCATAGCTGCAATGACAATGATGTTTTTGC
ACAATCGTGACTACCAGCGGAAGCAAGAGCTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29738.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis