Browse Element(s) Details


Os.33238.1.S1_x_at

Description gb:AK072366.1
DB_XREF= gi:32982389
TID=Os.33238.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33238 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033032H14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023063O05, full insert sequence.
FL= gb:AK072366.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2097011/11C2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g20930Os.11996.1.S1_at11/112+12365584..12375312Apoptosis inhibitory protein 5 containing protein, expressed
LOC_Os02g20940OsAffx.2704.1.S1_s_at11/112+12382079..12383625CHCH domain containing protein, expressed
LOC_Os02g20950Os.10252.1.S1_s_at11/112+12387114..12394238expressed protein
LOC_Os02g20950OsAffx.24356.1.S1_at10/112+12387114..12394238expressed protein
LOC_Os02g20960OsAffx.12140.1.S1_at10/112+12396205..12397782expressed protein
LOC_Os02g20970Os.33238.2.S1_at11/112+12398104..12405414C2 domain containing protein, expressed
LOC_Os02g20970Os.33238.1.S1_x_at11/112+12398104..12405414C2 domain containing protein, expressed
LOC_Os02g20980OsAffx.3097.1.S1_s_at9/112+12414560..12421423hypothetical protein
LOC_Os02g20980Os.12010.1.S1_at7/112+12414560..12421423hypothetical protein
LOC_Os02g20980Os.12010.1.S1_x_at6/112+12414560..12421423hypothetical protein
LOC_Os02g20980OsAffx.3097.1.S1_x_at3/112+12414560..12421423hypothetical protein
LOC_Os02g20980Os.15211.1.S1_at3/112+12414560..12421423hypothetical protein
LOC_Os02g20980Os.43072.1.S1_x_at2/112+12414560..12421423hypothetical protein
LOC_Os02g20980Os.43072.1.S1_at2/112+12414560..12421423hypothetical protein
LOC_Os02g20990NANA2+12428182..12428559hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33238.1.S1_x_at--293--7351Chr02:12400013..12400037 (25 bp)
GTGAAAGGCCATCTTGGACCCTATC
LOC_Os02g20970
Os.33238.1.S1_x_at--159--8091Chr02:12399998..12400022 (25 bp)
GGACCCTATCGTTTCCAGACAAAGA
LOC_Os02g20970
Os.33238.1.S1_x_at--950--3431Chr02:12399925..12399949 (25 bp)
CAGTAACCTCATGGGCAGCTCTCAA
LOC_Os02g20970
Os.33238.1.S1_x_at--470--3071Chr02:12399902..12399926 (25 bp)
AATCTTCTCTCTCTTCAAGTTCGAG
LOC_Os02g20970
Os.33238.1.S1_x_at--497--9771Chr02:12399876..12399900 (25 bp)
TAAGGATCCCATCTTTGACGACACA
LOC_Os02g20970
Os.33238.1.S1_x_at--154--2011Chr02:12399701..12399876 (25 bp)
ACTCGGTGACTGTTCCATAAGCATC
LOC_Os02g20970
Os.33238.1.S1_x_at--271--3211Chr02:12399270..12399294 (25 bp)
CAAGGTCTAGCTTTTCGTCCAGGAC
LOC_Os02g20970
Os.33238.1.S1_x_at--769--731Chr02:12399159..12399183 (25 bp)
ATGTTTGGGTCCATCGGCCAGGCAG
LOC_Os02g20970
Os.33238.1.S1_x_at--1035--8851Chr02:12399134..12399158 (25 bp)
TGATGTCGCAGTCACTTGGGAGCCT
LOC_Os02g20970
Os.33238.1.S1_x_at--120--1911Chr02:12399101..12399125 (25 bp)
ACGTGCGAGGTGTCAGGATTCCAGA
LOC_Os02g20970
Os.33238.1.S1_x_at--983--8671Chr02:12399052..12399076 (25 bp)
TGTGACAGCCCTAAGTCGTGCCAAT
LOC_Os02g20970
Target Sequence 
GTGAAAGGCCATCTTGGACCCTATCGTTTCCAGACAAAGATCCACAAGAAAACACTCAATCCAAAATGGATGGAGGAGTT
CAAAATACCAGTAACCTCATGGGCAGCTCTCAATCTTCTCTCTCTTCAAGTTCGAGATAAGGATCCCATCTTTGACGACA
CACTCGGTGACTGTTCCATAAGCATCAACAAATTGAGAGGTGGACAAAGGCACGACATATGGATTGCTCTGAAGAATATA
AAGACAGGGCGGATTCATATAGCAGTAACAGTACTTGAAGATGAAAATGAAAAGGTTCCAAACGATGACGATGAGCAGTG
TGGAACACCCAAGGGGGGTAAAGCAAGCACACCAAGGTCTAGCTTTTCGTCCAGGACCAACAATGAAAGTGAATCATCAG
AGGAGTTTCGAAAGATATCTGCTGAATATGAGCCAGTAGACATTGAAGGACTGGAAAAGGTTGATGTTTGGGTCCATCGG
CCAGGCAGTGATGTCGCAGTCACTTGGGAGCCTCGGAAAGGACGTGCGAGGTGTCAGGATTCCAGAATCCTACGAGAGAA
TGATGTCTACTGTGACAGCCCTAAGTCGTGCCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33238.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis