Browse Element(s) Details


OsAffx.24948.1.S1_at

Description tigr:9630.m01999
TID=OsAffx.24948.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0311011/11hypothetical protein
LOC_Os02g2088011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g03100Os.49760.1.S1_at9/113+1276415..1278729Agamous-like MADS box protein AGL14, putative, expressed
LOC_Os03g03110OsAffx.24948.1.S1_at11/113+1288723..1289365hypothetical protein
LOC_Os03g03120OsAffx.8512.1.S1_at9/113+1290133..1293472transposon protein, putative, Mutator sub-class
LOC_Os03g03130Os.25731.1.S1_at11/113+1296606..1299984Ubiquitin-conjugating enzyme E2 I, putative, expressed
LOC_Os03g03140Os.9314.1.S1_at11/113+1300894..1302829RNA recognition motif family protein, expressed
LOC_Os03g03150Os.6063.1.S1_at11/113+1305742..1309535Fizzy-related protein homolog, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24948.1.S1_at--194--5892Chr03:1288761..1288785 (25 bp)
GAGCGGTTGCAGCTTTCAGCGCACA
LOC_Os03g03110
OsAffx.24948.1.S1_at--370--9413Chr10:2918782..2918806 (25 bp)
TCGTCGGCACCATGGTTGAGATGTG
NONE
OsAffx.24948.1.S1_at--589--8893Chr10:2918798..2918822 (25 bp)
TGAGATGTGCTTGCGGCAAAGCCGC
NONE
OsAffx.24948.1.S1_at--178--1112Chr03:1288842..1288866 (25 bp)
AGTGAACAAATCCAACACCCCGAGG
LOC_Os03g03110
OsAffx.24948.1.S1_at--674--6552Chr03:1288884..1289005 (25 bp)
GATTCAGTGCGGGAAAGAGCCAAAG
LOC_Os03g03110
OsAffx.24948.1.S1_at--585--4392Chr03:1288999..1289023 (25 bp)
GCCAAAGTGTTGCTCGTTGTGGATA
LOC_Os03g03110
OsAffx.24948.1.S1_at--283--253Chr10:2919005..2919029 (25 bp)
ATATGGGAGGATCTGTTGAACGAAT
NONE
OsAffx.24948.1.S1_at--719--2973Chr10:2919040..2919063 (24 bp)
AATGGTTGCTTATTCCCATGCTGGC
NONE
OsAffx.24948.1.S1_at--550--2773Chr10:2919079..2919103 (25 bp)
AAGAGACATGTTGCGACAGCTTGCA
NONE
OsAffx.24948.1.S1_at--1155--6193Chr10:2919146..2919170 (25 bp)
GAGGCAAACCATAGGCAGATGCAAT
NONE
OsAffx.24948.1.S1_at--306--6334Chr11:18969083..18969111 (25 bp)
GATGCAATCCATATATCAGCAGCTG
NONE
Target Sequence 
GAGCGGTTGCAGCTTTCAGCGCACACGGGCCGCAGCGTCGTCGGCACCATGGTTGAGATGTGCTTGCGGCAAAGCCGCTG
NAGTGAACAAATCCAACACCCCGAGGAATCCANGGCGGCGGTGGATTCAGTGCGGGAAAGAGCCAAAGTGTTGCTCGTTG
TGGATATGGGAGGATCTGTTGAACGAATATGTGGAGGAAATGGTTGCTTATTCCCATGCTGGCGAGGACGATGGTCTAAG
AGACATGTTGCGACAGCTTGCAGAAGAGCATAAGGAAGAGAGGTCGAGGATGCAGGGTTTGGTTGAGGCAAACCATAGGC
AGATGCAATCCATATATCAGCAGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24948.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis