Browse Element(s) Details


Os.49760.1.S1_at

Description gb:AY551915.1
DB_XREF= gi:45385951
TID=Os.49760.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49760 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) MADS-box protein RMADS210 mRNA, complete cds.
PROD=MADS-box protein RMADS210
FL= gb:AY551915.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g031009/11Agamous-like MADS box protein AGL14, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g03080OsAffx.12717.1.S1_at11/113+1254653..1255334hypothetical protein
LOC_Os03g03100Os.49760.1.S1_at9/113+1276415..1278729Agamous-like MADS box protein AGL14, putative, expressed
LOC_Os03g03110OsAffx.24948.1.S1_at11/113+1288723..1289365hypothetical protein
LOC_Os03g03120OsAffx.8512.1.S1_at9/113+1290133..1293472transposon protein, putative, Mutator sub-class
LOC_Os03g03130Os.25731.1.S1_at11/113+1296606..1299984Ubiquitin-conjugating enzyme E2 I, putative, expressed
LOC_Os03g03140Os.9314.1.S1_at11/113+1300894..1302829RNA recognition motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009908biological_processflower development
GO:0009911biological_processpositive regulation of flower development
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49760.1.S1_at--4--91NONE
ATTCGCCAGCGCCAGGAAAATTCGG
NONE
Os.49760.1.S1_at--1145--8051Chr03:1277470..1277494 (25 bp)
GGCAAAAACTATATTTCCCCGTGTG
LOC_Os03g03100
Os.49760.1.S1_at--765--10151Chr03:1277462..1277485 (24 bp)
TATATTTCCCCGTGTGGCGATTGAT
LOC_Os03g03100
Os.49760.1.S1_at--877--7531NONE
GTGGCGATTGATTGCCGTCTAAACA
NONE
Os.49760.1.S1_at--937--6771Chr03:1276645..1276669 (25 bp)
GTCTAAACAGTCACACTACTTCCAT
LOC_Os03g03100
Os.49760.1.S1_at--188--8231Chr03:1276572..1276596 (25 bp)
GGCAACTTAGTACTGGCATTCCGGA
LOC_Os03g03100
Os.49760.1.S1_at--386--3911Chr03:1276560..1276584 (25 bp)
CTGGCATTCCGGAGGGCAATATGAT
LOC_Os03g03100
Os.49760.1.S1_at--286--6991Chr03:1276509..1276533 (25 bp)
GTACGTTGCAGTAATCTTGCCGTGC
LOC_Os03g03100
Os.49760.1.S1_at--810--9571Chr03:1276495..1276519 (25 bp)
TCTTGCCGTGCATATGAATTTCTAT
LOC_Os03g03100
Os.49760.1.S1_at--921--5111Chr03:1276453..1276477 (25 bp)
GCACACTAACGGGAGTTTCCAGGGA
LOC_Os03g03100
Os.49760.1.S1_at--657--1071Chr03:1276433..1276457 (25 bp)
AGGGAGCCTCCAATCTTATTAATGC
LOC_Os03g03100
Target Sequence 
ATTCGCCAGCGCCAGGAAAATTCGGCCTGAAAAGACGGCAAAAACTATATTTCCCCGTGTGGCGATTGATTGCCGTCTAA
ACAGTCACACTACTTCCATAAAGAAATTAGTTGTGAGACTGGCAAGGTTAGAAATTCTGAAAACATAGGCAACTTAGTAC
TGGCATTCCGGAGGGCAATATGATATGAGCACTAATTAGTTAATGATAATGTACGTTGCAGTAATCTTGCCGTGCATATG
AATTTCTATGCGTAACATGCATGAAAGCACACTAACGGGAGTTTCCAGGGAGCCTCCAATCTTATTAATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49760.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis