Browse Element(s) Details


Os.9314.1.S1_at

Description gb:AK066740.1
DB_XREF= gi:32976758
TID=Os.9314.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9314 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013082B19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013082B19, full insert sequence.
FL= gb:AK066740.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0314011/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g03100Os.49760.1.S1_at9/113+1276415..1278729Agamous-like MADS box protein AGL14, putative, expressed
LOC_Os03g03110OsAffx.24948.1.S1_at11/113+1288723..1289365hypothetical protein
LOC_Os03g03120OsAffx.8512.1.S1_at9/113+1290133..1293472transposon protein, putative, Mutator sub-class
LOC_Os03g03130Os.25731.1.S1_at11/113+1296606..1299984Ubiquitin-conjugating enzyme E2 I, putative, expressed
LOC_Os03g03140Os.9314.1.S1_at11/113+1300894..1302829RNA recognition motif family protein, expressed
LOC_Os03g03150Os.6063.1.S1_at11/113+1305742..1309535Fizzy-related protein homolog, putative, expressed
LOC_Os03g03164Os.4164.2.S1_a_at11/113+1318397..1323586Homeobox protein HD1, putative, expressed
LOC_Os03g03180Os.7349.1.S1_at11/113+1324348..1327861Protein of unknown function, DUF614 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006396biological_processRNA processing
GO:0009507cellular_componentchloroplast
GO:0003676molecular_functionnucleic acid binding
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9314.1.S1_at--453--3471Chr03:1302329..1302353 (25 bp)
CAGGTGATTCTCGTGGTTTTTGTCA
LOC_Os03g03140
Os.9314.1.S1_at--1138--5231Chr03:1302399..1302423 (25 bp)
GAATCAATCTGAACTGCGCGGCCGA
LOC_Os03g03140
Os.9314.1.S1_at--818--4571Chr03:1302414..1302438 (25 bp)
GCGCGGCCGACCTATCAAGATATCA
LOC_Os03g03140
Os.9314.1.S1_at--131--7051Chr03:1302476..1302500 (25 bp)
GTAAACTTTGAGCATGAGCGAGCCT
LOC_Os03g03140
Os.9314.1.S1_at--212--5891Chr03:1302491..1302515 (25 bp)
GAGCGAGCCTCAGTGTTATGCTTTT
LOC_Os03g03140
Os.9314.1.S1_at--571--4591Chr03:1302516..1302540 (25 bp)
GCTCCCTCAGTTTTGTTACGGTTAT
LOC_Os03g03140
Os.9314.1.S1_at--787--7412Chr12:14463580..14463687 (24 bp)
GTGTTGTTTCTTGCATCAATCTCTA
NONE
Os.9314.1.S1_at--477--331Chr03:1302619..1302643 (25 bp)
ATACTTGGTGCTACTTAATATCGAC
LOC_Os03g03140
Os.9314.1.S1_at--309--9371Chr03:1302639..1302663 (25 bp)
TCGACCTTATAAACACTTCTCAGAA
LOC_Os03g03140
Os.9314.1.S1_at--602--3691Chr03:1302681..1302705 (25 bp)
CTATCTGGTCATAGCAGTGGCGACT
LOC_Os03g03140
Os.9314.1.S1_at--187--10771Chr03:1302726..1302750 (25 bp)
TTGAGTTTGATGTCGAGGGCCTAAA
LOC_Os03g03140
Target Sequence 
CAGGTGATTCTCGTGGTTTTTGTCATGTTGATTTTGAGGACGACGAGNCGCTTGAGAAGGCTGTAGGAATGAATCAATCT
GAACTGCGCGGCCGACCTATCAAGATATCATATGCTGTCAGTAACAGGGGCTGAAGGCTACTAGATAGTAAACTTTGAGC
ATGAGCGAGCCTCAGTGTTATGCTTTTGCTCCCTCAGTTTTGTTACGGTTATATATCCGTATTAAGTTTCTACTGAAAGT
GTTGTTTCTTGCATCAATCTCTATGTAGAATGTAATTCACCGTGTGACAAATACTTGGTGCTACTTAATATCGACCTTAT
AAACACTTCTCAGAAATCTCTGTCAAATATAACTATCTGGTCATAGCAGTGGCGACTGATGTTGGAATGTTGTCTCATTG
AGTTTGATGTCGAGGGCCTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9314.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis