Browse Element(s) Details


Os.25731.1.S1_at

Description gb:AK062161.1
DB_XREF= gi:32972179
TID=Os.25731.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25731 (NCBI UniGene Cluster)
UG_TITLE=Rice mRNA, partial homologous to pPLB07
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-046-B02, full insert sequence.
FL= gb:AK062161.1 gb:AK102397.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0313011/11Ubiquitin-conjugating enzyme E2 I, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g03100Os.49760.1.S1_at9/113+1276415..1278729Agamous-like MADS box protein AGL14, putative, expressed
LOC_Os03g03110OsAffx.24948.1.S1_at11/113+1288723..1289365hypothetical protein
LOC_Os03g03120OsAffx.8512.1.S1_at9/113+1290133..1293472transposon protein, putative, Mutator sub-class
LOC_Os03g03130Os.25731.1.S1_at11/113+1296606..1299984Ubiquitin-conjugating enzyme E2 I, putative, expressed
LOC_Os03g03140Os.9314.1.S1_at11/113+1300894..1302829RNA recognition motif family protein, expressed
LOC_Os03g03150Os.6063.1.S1_at11/113+1305742..1309535Fizzy-related protein homolog, putative, expressed
LOC_Os03g03164Os.4164.2.S1_a_at11/113+1318397..1323586Homeobox protein HD1, putative, expressed
LOC_Os03g03180Os.7349.1.S1_at11/113+1324348..1327861Protein of unknown function, DUF614 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0009650biological_processUV protection
GO:0004840molecular_functionubiquitin conjugating enzyme activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25731.1.S1_at--702--8851Chr03:1299325..1299349 (25 bp)
TGATCCTGCTCAGACCGATGGTTAC
LOC_Os03g03130
Os.25731.1.S1_at--173--7891Chr03:1299344..1299365 (22 bp)
GGTTACCATCTTTTTATCCAGGATC
LOC_Os03g03130
Os.25731.1.S1_at--784--331Chr03:1299487..1299511 (25 bp)
ATACAAGAGGCGTGTTCGGCTGCAG
LOC_Os03g03130
Os.25731.1.S1_at--88--2731Chr03:1299515..1299539 (25 bp)
AAGCAGTATCCTCCGATTGTCTGAG
LOC_Os03g03130
Os.25731.1.S1_at--24--31Chr03:1299543..1299567 (25 bp)
ATTGGCATAGGGACCCATGCTGCAC
LOC_Os03g03130
Os.25731.1.S1_at--139--631Chr03:1299559..1299583 (25 bp)
ATGCTGCACATTCGCTTAGTTCTTG
LOC_Os03g03130
Os.25731.1.S1_at--197--711Chr03:1299595..1299619 (25 bp)
ATGAGTGCCTCTGCAAATATGGATT
LOC_Os03g03130
Os.25731.1.S1_at--202--771Chr03:1299688..1299712 (25 bp)
ATGTCTTGTGAGATCCGTCTTGGAT
LOC_Os03g03130
Os.25731.1.S1_at--734--1311Chr03:1299876..1299900 (25 bp)
AGATGTGGCAACTTCCATATTTTCT
LOC_Os03g03130
Os.25731.1.S1_at--503--10371Chr03:1299905..1299929 (25 bp)
TTTTTTCTGTTTTGATCCGGATCTG
LOC_Os03g03130
Os.25731.1.S1_at--958--6371Chr03:1299918..1299942 (25 bp)
GATCCGGATCTGTCGGCTATACAGA
LOC_Os03g03130
Target Sequence 
TGATCCTGCTCAGACCGATGGTTACCATCTTTTTATCCAGGATCCTACGGAATACAAGAGGCGTGTTCGGCTGCAGGCCA
AGCAGTATCCTCCGATTGTCTGAGAATATTGGCATAGGGACCCATGCTGCACATTCGCTTAGTTCTTGCTAGATCTAAAA
TGAGTGCCTCTGCAAATATGGATTAGACCAAAATATGACCTGGAAAAAGGGTGCTTTCGGAGTTTGAGAAGTATTATCAT
CGTTGTGGACTAATGTCTTGTGAGATCCGTCTTGGATGTAAACGGTTTTCTTAACTGTGATTTTTCAACCGTTTGAGTGC
TTGCTTTATGGGATAATGTCAAACATTGGTTTGGCAGGCAATCTCAAGAGTATTGCTATTTCTGTGCTAGTCTATATGAA
ANNCCCAGATTAAATTCGNCGAAACATATTAGTTTGCAAAAAGATGTGGCAACTTCCATATTTTCTGCATTTTTTTCTGT
TTTGATCCGGATCTGTCGGCTATACAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25731.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis