Browse Element(s) Details


OsAffx.12717.1.S1_at

Description tigr:9631.m00219
TID=OsAffx.12717.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0308011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g03050Os.38395.1.S1_at11/113+1237693..1238873expressed protein
LOC_Os03g03050Os.38395.3.S1_x_at6/113+1237693..1238873expressed protein
LOC_Os03g03050Os.38395.2.S1_x_at5/113+1237693..1238873expressed protein
LOC_Os03g03060Os.38395.4.S1_x_at9/113+1241934..1247317transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g03070Os.4706.1.S1_a_at11/113+1248228..1250128K-box region family protein, expressed
LOC_Os03g03080OsAffx.12717.1.S1_at11/113+1254653..1255334hypothetical protein
LOC_Os03g03100Os.49760.1.S1_at9/113+1276415..1278729Agamous-like MADS box protein AGL14, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12717.1.S1_at--67--7651Chr03:1254683..1254707 (25 bp)
GGGAGCTCAGTAGAACCATTGATGA
LOC_Os03g03080
OsAffx.12717.1.S1_at--743--7591Chr03:1254752..1254776 (25 bp)
GGGCATGTGGCGAAAGCTTCCACCA
LOC_Os03g03080
OsAffx.12717.1.S1_at--153--8371Chr03:1254760..1254784 (25 bp)
GGCGAAAGCTTCCACCAAGAAGGTC
LOC_Os03g03080
OsAffx.12717.1.S1_at--313--7271Chr03:1254798..1254822 (25 bp)
GTCCTTGCCAGGGACGTCAGCAACA
LOC_Os03g03080
OsAffx.12717.1.S1_at--256--9191Chr03:1254803..1254826 (24 bp)
TGCCAGGGACGTCAGCAACAGATGA
LOC_Os03g03080
OsAffx.12717.1.S1_at--1077--5591Chr03:1255191..1255215 (25 bp)
GACAAGGACTTACATCAACAGCATA
LOC_Os03g03080
OsAffx.12717.1.S1_at--126--2151Chr03:1255208..1255232 (25 bp)
ACAGCATAGTGGTGAGCTCCTCTAC
LOC_Os03g03080
OsAffx.12717.1.S1_at--746--4951Chr03:1255211..1255235 (25 bp)
GCATAGTGGTGAGCTCCTCTACATC
LOC_Os03g03080
OsAffx.12717.1.S1_at--962--3751Chr03:1255227..1255251 (25 bp)
CTCTACATCCAACTACAAGCATCTA
LOC_Os03g03080
OsAffx.12717.1.S1_at--99--2711Chr03:1255243..1255267 (25 bp)
AAGCATCTAATTTCATGAGGGTGGA
LOC_Os03g03080
OsAffx.12717.1.S1_at--19--7511Chr03:1255263..1255287 (25 bp)
GTGGAGTTTGTCGACGAGGACTACA
LOC_Os03g03080
Target Sequence 
GGGAGCTCAGTAGAACCATTGATGATGTTGGGGCCGATGGTGGACTTGGAGGGTCAATTGGATAGAGAAGGGCATGTGGC
GAAAGCTTCCACCAAGAAGGTCGATGGGGATCATCGTCCTTGCCAGGGACGTCAGCAACAGATGATAGAGTTCATCGACA
AGGACTTACATCAACAGCATAGTGGTGAGCTCCTCTACATCCAACTACAAGCATCTAATTTCATGAGGGTGGAGTTTGTC
GACGAGGACTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12717.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis