Browse Element(s) Details


Os.49858.1.S1_at

Description gb:AK102001.1
DB_XREF= gi:32987210
TID=Os.49858.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49858 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033079M23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033079M23, full insert sequence.
FL= gb:AK112066.1 gb:AK102001.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2087011/11RNA helicase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g20840Os.27541.1.A1_at1/112+12312582..12318463retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g20844Os.51128.1.S1_x_at11/112+12320247..12324011Optic atrophy 3 protein containing protein, expressed
LOC_Os02g20844Os.51128.1.S1_at10/112+12320247..12324011Optic atrophy 3 protein containing protein, expressed
LOC_Os02g20850Os.4022.1.S1_at10/112+12324544..12326740RAC-like GTP binding protein RAC13, putative, expressed
LOC_Os02g20860Os.9586.1.S1_at11/112+12335373..12338628ATP11 protein, expressed
LOC_Os02g20870Os.49858.1.S1_at11/112+12339725..12348525RNA helicase, putative, expressed
LOC_Os02g20870Os.38745.2.S1_at2/112+12339725..12348525RNA helicase, putative, expressed
LOC_Os02g20880OsAffx.24948.1.S1_at11/112+12348939..12349757hypothetical protein
LOC_Os02g20880OsAffx.19134.1.S1_at1/112+12348939..12349757hypothetical protein
LOC_Os02g20890OsAffx.8512.1.S1_at9/112+12350041..12352794transposon protein, putative, Mutator sub-class, expressed
LOC_Os02g20890Os.53378.1.S1_s_at1/112+12350041..12352794transposon protein, putative, Mutator sub-class, expressed
LOC_Os02g20900OsAffx.24354.1.S1_at11/112+12353884..12354667hypothetical protein
LOC_Os02g20920OsAffx.29738.4.S1_s_at11/112+12360551..12362631hypothetical protein
LOC_Os02g20920Os.54718.1.S1_at2/112+12360551..12362631hypothetical protein
LOC_Os02g20920Os.57571.1.S2_at1/112+12360551..12362631hypothetical protein
LOC_Os02g20920OsAffx.29738.1.S1_at1/112+12360551..12362631hypothetical protein
LOC_Os02g20930Os.11996.1.S1_at11/112+12365584..12375312Apoptosis inhibitory protein 5 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009627biological_processsystemic acquired resistance
GO:0010113biological_processnegative regulation of systemic acquired resistance
GO:0005634cellular_componentnucleus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49858.1.S1_at--1007--4891Chr02:12340388..12340412 (25 bp)
GCTTACCTCTGTTCATATTAGTTTA
LOC_Os02g20870
Os.49858.1.S1_at--39--6831Chr02:12340368..12340392 (25 bp)
GTTTATCCTACTACTATCTATCTGG
LOC_Os02g20870
Os.49858.1.S1_at--227--5931Chr02:12340325..12340349 (25 bp)
GAGCATCTGTGTTGAATATCCATTT
LOC_Os02g20870
Os.49858.1.S1_at--766--3151Chr02:12340236..12340260 (25 bp)
AATTCCCAAAATGTGCTTGCTCAGT
LOC_Os02g20870
Os.49858.1.S1_at--348--9091Chr02:12340219..12340243 (25 bp)
TGCTCAGTTAATTCCTCTCTCAAGG
LOC_Os02g20870
Os.49858.1.S1_at--366--2411Chr02:12339982..12340006 (25 bp)
AAACACACACGAGCCATGCATATGT
LOC_Os02g20870
Os.49858.1.S1_at--85--2051Chr02:12339948..12339972 (25 bp)
ACTTCTTTCTCCTGTGGTTGTACTA
LOC_Os02g20870
Os.49858.1.S1_at--801--5711Chr02:12339881..12339905 (25 bp)
GACTCTTTATATGGTAGCTCACTTT
LOC_Os02g20870
Os.49858.1.S1_at--958--1571Chr02:12339866..12339890 (25 bp)
AGCTCACTTTGTACGGGATATTCTA
LOC_Os02g20870
Os.49858.1.S1_at--218--7451Chr02:12339832..12339856 (25 bp)
GTGTCATCTGTCTCTTCAAAGCAAA
LOC_Os02g20870
Os.49858.1.S1_at--1141--6031Chr02:12339773..12339797 (25 bp)
GAGATCATGTCTTGCACTCGAGATA
LOC_Os02g20870
Target Sequence 
GCTTACCTCTGTTCATATTAGTTTATCCTACTACTATCTATCTGGAGTTAATGTACATAATTGGAGCATCTGTGTTGAAT
ATCCATTTCACTTAACACTTCCTGATATCTGAATGAGGATATCAACTGCTTGGAATTTCCTGATTGGTTAAAAATTCCCA
AAATGTGCTTGCTCAGTTAATTCCTCTCTCAAGGGGGCTGAAGGGAATTGGAGGAATCAATGGTTCACGTCATAATAACA
GTCAAAGCAAAACTTGTATTTATGGGCATGTCAAGTTGTCAACGTTGAGGTAGTGTACTAAGCTTCAATCCACACACACA
AACACACACGAGCCATGCATATGTGAAGGAACAACTTCTTTCTCCTGTGGTTGTACTATTATGCATACGATTTGCATTTC
ATTGTAGTGCCAAAAGAACAGACTCTTTATATGGTAGCTCACTTTGTACGGGATATTCTATTGGTTCCGGTGTCATCTGT
CTCTTCAAAGCAAACATTTAGGAAGGTTAGAAGAATTATTGAAGAACAGAGATCATGTCTTGCACTCGAGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49858.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis