Browse Element(s) Details


Os.51128.1.S1_x_at

Description gb:AK061035.1
DB_XREF= gi:32971053
TID=Os.51128.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51128 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-205-A09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-205-A09, full insert sequence.
FL= gb:AK061035.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2084411/11Optic atrophy 3 protein containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g20820OsAffx.30389.2.S1_at3/112+12305834..12306536retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g20820OsAffx.28661.1.S1_x_at3/112+12305834..12306536retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g20830OsAffx.10633.1.S1_at7/112+12309921..12312303retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g20840Os.27541.1.A1_at1/112+12312582..12318463retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g20844Os.51128.1.S1_x_at11/112+12320247..12324011Optic atrophy 3 protein containing protein, expressed
LOC_Os02g20844Os.51128.1.S1_at10/112+12320247..12324011Optic atrophy 3 protein containing protein, expressed
LOC_Os02g20850Os.4022.1.S1_at10/112+12324544..12326740RAC-like GTP binding protein RAC13, putative, expressed
LOC_Os02g20860Os.9586.1.S1_at11/112+12335373..12338628ATP11 protein, expressed
LOC_Os02g20870Os.49858.1.S1_at11/112+12339725..12348525RNA helicase, putative, expressed
LOC_Os02g20870Os.38745.2.S1_at2/112+12339725..12348525RNA helicase, putative, expressed
LOC_Os02g20880OsAffx.24948.1.S1_at11/112+12348939..12349757hypothetical protein
LOC_Os02g20880OsAffx.19134.1.S1_at1/112+12348939..12349757hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51128.1.S1_x_at--605--1651Chr02:12323506..12323530 (25 bp)
AGCGCCAAGCTAATTCTCGAGGTCT
LOC_Os02g20844
Os.51128.1.S1_x_at--718--1031Chr02:12323525..12323549 (25 bp)
AGGTCTCTCTGGAGTTCTTTTCAGA
LOC_Os02g20844
Os.51128.1.S1_x_at--873--5051Chr02:12323551..12323575 (25 bp)
GCAGCAGTGCTCCAGACCAAACAAA
LOC_Os02g20844
Os.51128.1.S1_x_at--202--3051Chr02:12323640..12323664 (25 bp)
AATCGATTACTGTCCTGCATTGCTT
LOC_Os02g20844
Os.51128.1.S1_x_at--680--3551Chr02:12323703..12323727 (25 bp)
CATCTTGTAGCTTGTGTTTTTCCTG
LOC_Os02g20844
Os.51128.1.S1_x_at--16--10371Chr02:12323719..12323743 (25 bp)
TTTTTCCTGCCAATCACCATGGGAA
LOC_Os02g20844
Os.51128.1.S1_x_at--255--771Chr02:12323743..12323767 (25 bp)
ATGGGCCCATAGCTTGAGGTTTCGA
LOC_Os02g20844
Os.51128.1.S1_x_at--715--791Chr02:12323862..12323886 (25 bp)
ATGTGTGTGTTGTCTGGCAATTCTC
LOC_Os02g20844
Os.51128.1.S1_x_at--167--8231Chr02:12323877..12323901 (25 bp)
GGCAATTCTCGCGAGTTGTCAACTT
LOC_Os02g20844
Os.51128.1.S1_x_at--526--7011Chr02:12323962..12323986 (25 bp)
GTACTTCTGGTTTGTAACTCGATCA
LOC_Os02g20844
Os.51128.1.S1_x_at--500--2551Chr02:12323977..12324001 (25 bp)
AACTCGATCATGTTCATATCAGTGT
LOC_Os02g20844
Target Sequence 
AGCGCCAAGCTAATTCTCGAGGTCTCTCTGGAGTTCTTTTCAGAAGCAGCAGTGCTCCAGACCAAACAAAGGCCTCATGA
GTTTGATTAACTAGGACAAAGGCAAGACTTCAATGGCAGCATCACAACCAAGTTAATCGATTACTGTCCTGCATTGCTTG
TGATATTGCACATGGATGTGCAGATTTTTGAAGCACACATCTTGTAGCTTGTGTTTTTCCTGCCAATCACCATGGGAATG
GGCCCATAGCTTGAGGTTTCGAACAACTTGTCGTATTTGAGGCTATTTTAACTCGAAAGCGTTGGAGAGCAGTTCCAAGA
AGGGAACATCTGGCAAGTGCAAAGCAGAATTGTGCTATGTGTGTGTTGTCTGGCAATTCTCGCGAGTTGTCAACTTGCAT
CATAAGATAACTGTATGCCATGAACTTGTCAACATGGGAAGCAGATTGCTGCCAAAGTACTTCTGGTTTGTAACTCGATC
ATGTTCATATCAGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51128.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis