Browse Element(s) Details


Os.9586.1.S1_at

Description gb:AK072956.1
DB_XREF= gi:32982979
TID=Os.9586.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9586 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033113H15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023150C21, full insert sequence.
FL= gb:AK102909.1 gb:AK072956.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2086011/11ATP11 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g20830OsAffx.10633.1.S1_at7/112+12309921..12312303retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g20840Os.27541.1.A1_at1/112+12312582..12318463retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g20844Os.51128.1.S1_x_at11/112+12320247..12324011Optic atrophy 3 protein containing protein, expressed
LOC_Os02g20844Os.51128.1.S1_at10/112+12320247..12324011Optic atrophy 3 protein containing protein, expressed
LOC_Os02g20850Os.4022.1.S1_at10/112+12324544..12326740RAC-like GTP binding protein RAC13, putative, expressed
LOC_Os02g20860Os.9586.1.S1_at11/112+12335373..12338628ATP11 protein, expressed
LOC_Os02g20870Os.49858.1.S1_at11/112+12339725..12348525RNA helicase, putative, expressed
LOC_Os02g20870Os.38745.2.S1_at2/112+12339725..12348525RNA helicase, putative, expressed
LOC_Os02g20880OsAffx.24948.1.S1_at11/112+12348939..12349757hypothetical protein
LOC_Os02g20880OsAffx.19134.1.S1_at1/112+12348939..12349757hypothetical protein
LOC_Os02g20890OsAffx.8512.1.S1_at9/112+12350041..12352794transposon protein, putative, Mutator sub-class, expressed
LOC_Os02g20890Os.53378.1.S1_s_at1/112+12350041..12352794transposon protein, putative, Mutator sub-class, expressed
LOC_Os02g20900OsAffx.24354.1.S1_at11/112+12353884..12354667hypothetical protein
LOC_Os02g20920OsAffx.29738.4.S1_s_at11/112+12360551..12362631hypothetical protein
LOC_Os02g20920Os.54718.1.S1_at2/112+12360551..12362631hypothetical protein
LOC_Os02g20920Os.57571.1.S2_at1/112+12360551..12362631hypothetical protein
LOC_Os02g20920OsAffx.29738.1.S1_at1/112+12360551..12362631hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9586.1.S1_at--75--6471Chr02:12335938..12335962 (25 bp)
GATACAGTGCTTATCCGAGGAGACG
LOC_Os02g20860
Os.9586.1.S1_at--283--6171Chr02:12335922..12335946 (25 bp)
GAGGAGACGTTGTTTTCACCAGTAA
LOC_Os02g20860
Os.9586.1.S1_at--356--6111Chr02:12335864..12335888 (25 bp)
GAGTGCTCACTCATTCTACCTGAAT
LOC_Os02g20860
Os.9586.1.S1_at--42--2351Chr02:12335720..12335744 (25 bp)
AAAGCTTCCTGGAGCATGTCAGTGC
LOC_Os02g20860
Os.9586.1.S1_at--880--4931Chr02:12335697..12335721 (25 bp)
GCATTTTTACAGTGGCAGGGTCTAG
LOC_Os02g20860
Os.9586.1.S1_at--896--331Chr02:12335663..12335687 (25 bp)
ATACACTGCGTATCACTCTGAGATT
LOC_Os02g20860
Os.9586.1.S1_at--870--4851Chr02:12335638..12335662 (25 bp)
GCTAGCTGAACATCAATTCTACGGT
LOC_Os02g20860
Os.9586.1.S1_at--677--6751Chr02:12335556..12335580 (25 bp)
GTTACAGCCGTAAGTCCTAGGAGGA
LOC_Os02g20860
Os.9586.1.S1_at--938--8211Chr02:12335534..12335558 (25 bp)
GGAATTCCTTAACTATCTTCTGCCG
LOC_Os02g20860
Os.9586.1.S1_at--114--431Chr02:12335520..12335544 (25 bp)
ATCTTCTGCCGTTTCTTTTGAACCT
LOC_Os02g20860
Os.9586.1.S1_at--125--5431Chr02:12335501..12335525 (25 bp)
GAACCTCTTGTCTGCAATAACATGG
LOC_Os02g20860
Target Sequence 
GATACAGTGCTTATCCGAGGAGACGTTGTTTTCACCAGTAAACTGACTGATTCAGAGGCGAAATGTCTTTTAGAGAGTGC
TCACTCATTCTACCTGAATGATGTGAGGTACAGGCTTGTAGAGCGCTTCAACAAAGAACCACATGAGTTTGAGTTCAAAG
ATGTCCTGCAAGTGCTTGAAATGCCAACCATGTGACAAGATTGAAGACCTGCAATAGCAAAGCTTCCTGGAGCATGTCAG
TGCATTTTTACAGTGGCAGGGTCTAGATTGCACTAATACACTGCGTATCACTCTGAGATTGCTAGCTGAACATCAATTCT
ACGGTTGTGTGGTAGCAATAATACCATAATACCATGAGAAAAATTTGTGTAAGTGCTAAGCAGTTACAGCCGTAAGTCCT
AGGAGGAATTCCTTAACTATCTTCTGCCGTTTCTTTTGAACCTCTTGTCTGCAATAACATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9586.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis