Browse Element(s) Details


Os.53378.1.S1_s_at

Description gb:AK072351.1
DB_XREF= gi:32982374
TID=Os.53378.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53378 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023051A03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023051A03, full insert sequence.
FL= gb:AK072351.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1068011/11expressed protein
LOC_Os11g291402/11expressed protein
LOC_Os02g208901/11transposon protein, putative, Mutator sub-class, expressed
LOC_Os04g083401/11signal peptidase I family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g10660OsAffx.8589.1.S1_at1/115+5810829..5814142transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g10670Os.11534.1.S1_at11/115+5825356..5827602Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os05g10670Os.31975.1.S1_at8/115+5825356..5827602Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os05g10670Os.31975.1.S1_x_at8/115+5825356..5827602Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os05g10670Os.11774.1.S1_x_at1/115+5825356..5827602Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os05g10680Os.53378.1.S1_s_at11/115+5835618..5836094expressed protein
LOC_Os05g10690Os.23087.1.S1_at11/115+5849486..5853297myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os05g10690Os.623.1.S1_x_at1/115+5849486..5853297myb-like DNA-binding domain, SHAQKYF class family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0016020cellular_componentmembrane
GO:0003700molecular_functiontranscription factor activity
GO:0008233molecular_functionpeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53378.1.S1_s_at--592--3771Chr05:5835647..5835671 (25 bp)
CTCTCTCTCCCAATCTTGTTTATCT
LOC_Os05g10680
Os.53378.1.S1_s_at--317--10791Chr05:5835662..5835686 (25 bp)
TTGTTTATCTCTCTCGTTTTCTTCT
LOC_Os05g10680
Os.53378.1.S1_s_at--145--10392Chr05:5835678..5835702 (25 bp)
TTTTCTTCTCTCTTCGAGGAGCCGA
LOC_Os05g10680
Os.53378.1.S1_s_at--487--3651Chr05:5835682..5835706 (25 bp)
CTTCTCTCTTCGAGGAGCCGAGGCG
LOC_Os05g10680
Os.53378.1.S1_s_at--3--932Chr05:5835802..5835826 (25 bp)
AGGCAGTGGCGGCATACGGCGACGG
LOC_Os05g10680
Os.53378.1.S1_s_at--847--5751Chr05:5835892..5835916 (25 bp)
GACGAAGTCCCCACGGGCGGAGAGG
LOC_Os05g10680
Os.53378.1.S1_s_at--370--8651Chr05:5835920..5835944 (25 bp)
TGGGCTCCCGAAGCTGGCATCGAGC
LOC_Os05g10680
Os.53378.1.S1_s_at--119--5631Chr05:5835953..5835977 (25 bp)
GACAACAGCGGCAGGCTCCCCATGG
LOC_Os05g10680
Os.53378.1.S1_s_at--1146--4692Chr11:16387885..16387931 (25 bp)
GCGGCGGTGCTTTTGAGTGATTTTT
LOC_Os11g29140
Os.53378.1.S1_s_at--659--7411Chr05:5836004..5836028 (25 bp)
GTGATTGTTGAGTGATTTTTGTTGA
LOC_Os05g10680
Os.53378.1.S1_s_at--873--8773Chr11:16387915..16387939 (25 bp)
TGTTTTGTGTGATTTTTGTTGGTGA
LOC_Os11g29140
Target Sequence 
CTCTCTCTCCCAATCTTGTTTATCTCTCTCGTTTTCTTCTCTCTTCGAGGAGCCGAGGCGGCAGGCGGCAGCGCAAGATG
GGAGGCGGTGGGCGACGGGAGGTGGCGGCGGGTGGAGACGGTGCAGCCCAGCGGCGGCAGCGGCGGGGAGAGGGGAGGCA
GTGGCGGCATACGGCGACGGCAAGCGGCGCCTCCCCTCCACTAGATCTGGCGGGAGGAGAGACGGTGGGCTCCTGCGGCC
CCTGCGACGAAGTCCCCACGGGCGGAGAGGCGGTGGGCTCCCGAAGCTGGCATCGAGCTCCCCCACGACAACAGCGGCAG
GCTCCCCATGGCGGCGGTGCTTTTGAGTGATTTTTTTGTGATTGTTGAGTGATTTTTGTTGATGATTTGTGATTGTTTTG
TGTGATTTTTGTTGGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53378.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis