Browse Element(s) Details


Os.31975.1.S1_x_at

Description gb:AK106392.1
DB_XREF= gi:32991601
TID=Os.31975.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.31975 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-102-F01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-102-F01, full insert sequence.
FL= gb:AK106392.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g106708/11Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g10660OsAffx.8589.1.S1_at1/115+5810829..5814142transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g10670Os.11534.1.S1_at11/115+5825356..5827602Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os05g10670Os.31975.1.S1_at8/115+5825356..5827602Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os05g10670Os.31975.1.S1_x_at8/115+5825356..5827602Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os05g10670Os.11774.1.S1_x_at1/115+5825356..5827602Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os05g10680Os.53378.1.S1_s_at11/115+5835618..5836094expressed protein
LOC_Os05g10690Os.23087.1.S1_at11/115+5849486..5853297myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os05g10690Os.623.1.S1_x_at1/115+5849486..5853297myb-like DNA-binding domain, SHAQKYF class family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003676molecular_functionnucleic acid binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31975.1.S1_x_at--159--9451Chr05:5826212..5826236 (25 bp)
TCGGCTGGGTATCCGACCTCATCAA
LOC_Os05g10670
Os.31975.1.S1_x_at--937--9591Chr05:5826194..5826218 (25 bp)
TCATCAACTGAGCAAACCCAACAAG
LOC_Os05g10670
Os.31975.1.S1_x_at--483--3371Chr05:5826165..5826189 (25 bp)
CAGCCATGGCTGAGTAAGAATTTTC
LOC_Os05g10670
Os.31975.1.S1_x_at--713--2731Chr05:5826150..5826174 (25 bp)
AAGAATTTTCCTCATGCCTCCATAG
LOC_Os05g10670
Os.31975.1.S1_x_at--891--9251Chr05:5826142..5826166 (25 bp)
TCCTCATGCCTCCATAGTGGAAGCA
LOC_Os05g10670
Os.31975.1.S1_x_at--639--6571Chr05:5826020..5826044 (25 bp)
GATTCTCCTAATCCTTGTACATATG
LOC_Os05g10670
Os.31975.1.S1_x_at--902--6731Chr05:5825888..5825912 (25 bp)
GTTCAGTTCAGTTCAGTCCAGATGG
LOC_Os05g10670
Os.31975.1.S1_x_at--917--6731Chr05:5825878..5825902 (25 bp)
GTTCAGTCCAGATGGTGGTGGCCAT
LOC_Os05g10670
Os.31975.1.S1_x_at--595--7491NONE
GTGGTTAAATCTTGTTTCGTACATA
NONE
Os.31975.1.S1_x_at--990--6011NONE
GAGAGATCAACCACGCATAGAGCAT
NONE
Os.31975.1.S1_x_at--730--5931NONE
GAGCATGATCTCATGATCTGATCAC
NONE
Target Sequence 
TCGGCTGGGTATCCGACCTCATCAACTGAGCAAACCCAACAAGGCGNCAGCCATGGCTGAGTAAGAATTTTCCTCATGCC
TCCATAGTGGAAGCAGAAGGTAGCAGGAAGAGAAGGAAAAAAAAAGAAAATGGAAAAGTTTTTCCAACCAAAAAAATTCT
ATTATTTTTTTATTTTAGTTTCTTGCTTGTTAGATTCTCCTAATCCTTGTACATATGTTCATCANNANNANNNACCATCC
TATGTGAATATTCTTGGATGGATGCTGGGGGGGCCAGGGAGGCAGGCAAAGGCAAAGGCAGGATTTGTTTTGGGGTTTTT
TTCAGTTCAGTTCAGTTCAGTCCAGATGGTGGTGGCCATGGCTGCAGTTGCAGTACAAGAAGAAGAAGATCCGAAATGGA
TCAAGATACGTGGTTAAATCTTGTTTCGTACATAGTGTGAGTGTCAAGTGTGTATATTTACTTGAGATCTCGTGGAGAGA
TCAACCACGCATAGAGCATGATCTCATGATCTGATCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31975.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis