Browse Element(s) Details


Os.23087.1.S1_at

Description gb:AK065594.1
DB_XREF= gi:32975612
TID=Os.23087.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.23087 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013029P13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013029P13, full insert sequence.
FL= gb:AK061427.1 gb:AK065594.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1069011/11myb-like DNA-binding domain, SHAQKYF class family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g10670Os.11534.1.S1_at11/115+5825356..5827602Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os05g10670Os.31975.1.S1_at8/115+5825356..5827602Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os05g10670Os.31975.1.S1_x_at8/115+5825356..5827602Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os05g10670Os.11774.1.S1_x_at1/115+5825356..5827602Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os05g10680Os.53378.1.S1_s_at11/115+5835618..5836094expressed protein
LOC_Os05g10690Os.23087.1.S1_at11/115+5849486..5853297myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os05g10690Os.623.1.S1_x_at1/115+5849486..5853297myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os05g10700OsAffx.30350.1.S1_at1/115+5866463..5871651retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g10710NANA5+5873281..5876079hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0045449biological_processregulation of transcription
GO:0003676molecular_functionnucleic acid binding
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23087.1.S1_at--276--3431Chr05:5850055..5850079 (25 bp)
CAGAGTTACCTGATCTTCATCTTCA
LOC_Os05g10690
Os.23087.1.S1_at--808--10531Chr05:5850040..5850064 (25 bp)
TTCATCTTCAGTGCTCCTCATAAAA
LOC_Os05g10690
Os.23087.1.S1_at--1092--8031Chr05:5849988..5850012 (25 bp)
GGAGATCATGTACCTCAATCAGAAA
LOC_Os05g10690
Os.23087.1.S1_at--1089--5591Chr05:5849937..5849961 (25 bp)
GACAATCAGTGATCAGCCCATGCAC
LOC_Os05g10690
Os.23087.1.S1_at--386--331Chr05:5849862..5849886 (25 bp)
ATACTTTTGCAATCACCTTATAGCT
LOC_Os05g10690
Os.23087.1.S1_at--192--6311Chr05:5849768..5849792 (25 bp)
GATGAGCTCACAATATTCAGTTTGC
LOC_Os05g10690
Os.23087.1.S1_at--446--4311Chr05:5849689..5849713 (25 bp)
CCTTTTATTCACTGCATACACACAC
LOC_Os05g10690
Os.23087.1.S1_at--767--331Chr05:5849674..5849698 (25 bp)
ATACACACACATGATCATCTCCTTG
LOC_Os05g10690
Os.23087.1.S1_at--905--6431Chr05:5849662..5849686 (25 bp)
GATCATCTCCTTGTACAGCACATGA
LOC_Os05g10690
Os.23087.1.S1_at--976--7391Chr05:5849517..5849541 (25 bp)
GTGATCGATGTTTACCTGTCGTTTG
LOC_Os05g10690
Os.23087.1.S1_at--10--3891Chr05:5849502..5849526 (25 bp)
CTGTCGTTTGGTGTGCTGCCAATAA
LOC_Os05g10690
Target Sequence 
CAGAGTTACCTGATCTTCATCTTCAGTGCTCCTCATAAAAGTGGAGGAGTTCAGAAAAGGGTGTTTTGGAGATCATGTAC
CTCAATCAGAAAGTTAGGTGTTACTGTAATGTTAGAATGACAATCAGTGATCAGCCCATGCACAAAATAAGATAAGAAAA
GCAAAGAAGAAATGGTTTTTATCATATCATACCATACTTTTGCAATCACCTTATAGCTTTATGTTGACACAAAGGCATGG
CAAGGGTGGTTGCTGGTTTGGATTTTCAGAGCCNGGAGAAGGTGAAAGATGAGCTCACAATATTCAGTTTGCAGTGGGCA
ATGACAAGGACAGGCAAAAACCTCAGCTACCAAAAATTTCTTCTTTCCTTTTATTCACTGCATACACACACATGATCATC
TCCTTGTACAGCACATGAGGTTAATTAGCTATGCATGCATGCATGGAACCAATTACAAAAATGTCTAAATTAATTGGTTT
TTCTAGTACAAGTTAATTTCTTTTCTCTTTTTCTGAAAGTGAGGTTCTTGTACAGGTTGTGATCGATGTTTACCTGTCGT
TTGGTGTGCTGCCAATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23087.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis