Browse Element(s) Details


Os.31975.1.S1_at

Description gb:AK106392.1
DB_XREF= gi:32991601
TID=Os.31975.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.31975 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-102-F01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-102-F01, full insert sequence.
FL= gb:AK106392.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g106708/11Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g10660OsAffx.8589.1.S1_at1/115+5810829..5814142transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g10670Os.11534.1.S1_at11/115+5825356..5827602Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os05g10670Os.31975.1.S1_at8/115+5825356..5827602Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os05g10670Os.31975.1.S1_x_at8/115+5825356..5827602Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os05g10670Os.11774.1.S1_x_at1/115+5825356..5827602Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os05g10680Os.53378.1.S1_s_at11/115+5835618..5836094expressed protein
LOC_Os05g10690Os.23087.1.S1_at11/115+5849486..5853297myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os05g10690Os.623.1.S1_x_at1/115+5849486..5853297myb-like DNA-binding domain, SHAQKYF class family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003676molecular_functionnucleic acid binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31975.1.S1_at--273--5771Chr05:5826216..5826240 (25 bp)
GACGTCGGCTGGGTATCCGACCTCA
LOC_Os05g10670
Os.31975.1.S1_at--160--9451Chr05:5826212..5826236 (25 bp)
TCGGCTGGGTATCCGACCTCATCAA
LOC_Os05g10670
Os.31975.1.S1_at--936--9591Chr05:5826194..5826218 (25 bp)
TCATCAACTGAGCAAACCCAACAAG
LOC_Os05g10670
Os.31975.1.S1_at--568--9711Chr05:5826191..5826215 (25 bp)
TCAACTGAGCAAACCCAACAAGGCG
LOC_Os05g10670
Os.31975.1.S1_at--482--3371Chr05:5826165..5826189 (25 bp)
CAGCCATGGCTGAGTAAGAATTTTC
LOC_Os05g10670
Os.31975.1.S1_at--712--2731Chr05:5826150..5826174 (25 bp)
AAGAATTTTCCTCATGCCTCCATAG
LOC_Os05g10670
Os.31975.1.S1_at--447--10291Chr05:5826144..5826168 (25 bp)
TTTCCTCATGCCTCCATAGTGGAAG
LOC_Os05g10670
Os.31975.1.S1_at--444--3531Chr05:5826138..5826162 (25 bp)
CATGCCTCCATAGTGGAAGCAGAAG
LOC_Os05g10670
Os.31975.1.S1_at--138--6051NONE
GAGATCTCGTGGAGAGATCAACCAC
NONE
Os.31975.1.S1_at--989--6011NONE
GAGAGATCAACCACGCATAGAGCAT
NONE
Os.31975.1.S1_at--174--1271NONE
AGATCAACCACGCATAGAGCATGAT
NONE
Target Sequence 
GACGTCGGCTGGGTATCCGACCTCATCAACTGAGCAAACCCAACAAGGCGNCAGCCATGGCTGAGTAAGAATTTTCCTCA
TGCCTCCATAGTGGAAGCAGAAGGTAGCAGGAAGAGAAGGAAAAAAAAAGAAAATGGAAAAGTTTTTCCAACCAAAAAAA
TTCTATTATTTTTTTATTTTAGTTTCTTGCTTGTTAGATTCTCCTAATCCTTGTACATATGTTCATCANNANNANNNACC
ATCCTATGTGAATATTCTTGGATGGATGCTGGGGGGGCCAGGGAGGCAGGCAAAGGCAAAGGCAGGATTTGTTTTGGGGT
TTTTTTCAGTTCAGTTCAGTTCAGTCCAGATGGTGGTGGCCATGGCTGCAGTTGCAGTACAAGAAGAAGAAGATCCGAAA
TGGATCAAGATACGTGGTTAAATCTTGTTTCGTACATAGTGTGAGTGTCAAGTGTGTATATTTACTTGAGATCTCGTGGA
GAGATCAACCACGCATAGAGCATGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31975.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis