Browse Element(s) Details


OsAffx.19134.1.S1_at

Description tigr:9639.m02998
TID=OsAffx.19134.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g208801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g20844Os.51128.1.S1_x_at11/112+12320247..12324011Optic atrophy 3 protein containing protein, expressed
LOC_Os02g20844Os.51128.1.S1_at10/112+12320247..12324011Optic atrophy 3 protein containing protein, expressed
LOC_Os02g20850Os.4022.1.S1_at10/112+12324544..12326740RAC-like GTP binding protein RAC13, putative, expressed
LOC_Os02g20860Os.9586.1.S1_at11/112+12335373..12338628ATP11 protein, expressed
LOC_Os02g20870Os.49858.1.S1_at11/112+12339725..12348525RNA helicase, putative, expressed
LOC_Os02g20870Os.38745.2.S1_at2/112+12339725..12348525RNA helicase, putative, expressed
LOC_Os02g20880OsAffx.24948.1.S1_at11/112+12348939..12349757hypothetical protein
LOC_Os02g20880OsAffx.19134.1.S1_at1/112+12348939..12349757hypothetical protein
LOC_Os02g20890OsAffx.8512.1.S1_at9/112+12350041..12352794transposon protein, putative, Mutator sub-class, expressed
LOC_Os02g20890Os.53378.1.S1_s_at1/112+12350041..12352794transposon protein, putative, Mutator sub-class, expressed
LOC_Os02g20900OsAffx.24354.1.S1_at11/112+12353884..12354667hypothetical protein
LOC_Os02g20920OsAffx.29738.4.S1_s_at11/112+12360551..12362631hypothetical protein
LOC_Os02g20920Os.54718.1.S1_at2/112+12360551..12362631hypothetical protein
LOC_Os02g20920Os.57571.1.S2_at1/112+12360551..12362631hypothetical protein
LOC_Os02g20920OsAffx.29738.1.S1_at1/112+12360551..12362631hypothetical protein
LOC_Os02g20930Os.11996.1.S1_at11/112+12365584..12375312Apoptosis inhibitory protein 5 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19134.1.S1_at--219--6591NONE
GATTGTATTGAACGCGGGCGAATCA
NONE
OsAffx.19134.1.S1_at--704--7971Chr11:18966969..18966993 (25 bp)
GGATCCGGCAGTGCTTAGGCATCTG
NONE
OsAffx.19134.1.S1_at--1070--911Chr11:18966985..18967009 (25 bp)
AGGCATCTGGGCTACGGATCCGACA
NONE
OsAffx.19134.1.S1_at--670--9291Chr11:18967003..18967162 (25 bp)
TCCGACATTGTCAAGGGCCAGGGCA
NONE
OsAffx.19134.1.S1_at--271--7531Chr11:18968888..18968912 (25 bp)
GTGGAATCAGTTTGACCGCGGTGCA
NONE
OsAffx.19134.1.S1_at--957--7771Chr11:18968907..18968931 (25 bp)
GGTGCATGGCGCATTCCCAGTGAAC
NONE
OsAffx.19134.1.S1_at--570--7331Chr11:18968926..18968950 (25 bp)
GTGAACCATAAACCTAGCCCTAGGC
NONE
OsAffx.19134.1.S1_at--625--2851Chr11:18969042..18969259 (25 bp)
AAGTCGAGGATGCAGGCCACATTTG
NONE
OsAffx.19134.1.S1_at--34--4391Chr11:18969250..18969274 (25 bp)
GCCACATTTGGTGCAAGTAGGTAAA
NONE
OsAffx.19134.1.S1_at--179--1033Chr11:18969268..18969292 (25 bp)
AGGTAAATCAGTGCCATTTTGTGTA
NONE
OsAffx.19134.1.S1_at--1049--9731Chr11:18969324..18969397 (25 bp)
TCAATTTCGGATATGTCTGGCAGCT
NONE
Target Sequence 
GATTGTATTGAACGCGGGCGAATCAGACGAGGAGGGGCGGCAGAGGCCCGACGATGACAAGGACGAGCAGTGGTGGCGAG
GCCCAGGCAGCGAAGCTCTGGCTACGGTGGTGGATCCGGCAGTGCTTAGGCATCTGGGCTACGGATCCGACATTGTCAAG
GGCCAGGGCAGCAGAGTTGCGTTGGCAGTGGATGTAGAGGTGACTGGGCATGCGGGCTGCAAATCCGGCGGTGCTGAGGT
GTACGGGTGGCGGGGACCGAGTGGAATCAGTTTGACCGCGGTGCATGGCGCATTCCCAGTGAACCATAAACCTAGCCCTA
GGCTTCTCCGGCGGCGGCGGGATTTGGAGGCGGCGTCGGCGGCGGCAAACTTTGGCGGCAATGGCGGGGAGAGGCAGAAG
AGCATAAGGAAGAGAAGTCGAGGATGCAGGCCACATTTGGTGCAAGTAGGTAAATCAGTGCCATTTTGTGTAATGTTAAT
CATTGTCTATGAATTATGTGGATTCAATTTCGGATATGTCTGGCAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19134.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis