Browse Element(s) Details


Os.54495.1.S1_at

Description gb:AK105353.1
DB_XREF= gi:32990562
TID=Os.54495.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54495 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-119-B01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-119-B01, full insert sequence.
FL= gb:AK105353.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g086705/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g08650NANA9+4525474..4531479retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g08660Os.9109.1.S1_a_at11/119+4534277..4542655haloacid dehalogenase-like hydrolase family protein, expressed
LOC_Os09g08670Os.54495.1.S1_at5/119+4553930..4554720expressed protein
LOC_Os09g08680OsAffx.6211.1.S1_x_at11/119+4555816..4567790expressed protein
LOC_Os09g08680Os.26513.1.A1_at11/119+4555816..4567790expressed protein
LOC_Os09g08690OsAffx.29768.1.S1_at11/119+4568163..4568663hypothetical protein
LOC_Os09g08700OsAffx.29769.1.S1_at11/119+4570504..4571628hypothetical protein
LOC_Os09g08710Os.5199.1.S1_at11/119+4576706..4579685expressed protein
LOC_Os09g08710Os.5199.2.S1_x_at10/119+4576706..4579685expressed protein
LOC_Os09g08710Os.20593.1.S1_x_at1/119+4576706..4579685expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54495.1.S1_at--237--9511Chr09:4553782..4553806 (25 bp)
TCTCTCGGGATTCGCCTCCGTTCAT
NONE
Os.54495.1.S1_at--786--8291NONE
GGCTTCTCAACCAAGTTGCACTGTA
NONE
Os.54495.1.S1_at--60--2831Chr09:4554633..4554656 (24 bp)
AAGTTGCACTGTACGGCTGGTGGTT
LOC_Os09g08670
Os.54495.1.S1_at--366--9931Chr09:4554643..4554667 (25 bp)
TACGGCTGGTGGTTTCACTGTAGGC
LOC_Os09g08670
Os.54495.1.S1_at--809--3331Chr09:4554658..4554682 (25 bp)
CACTGTAGGCGCAGTGGTTTCTATA
LOC_Os09g08670
Os.54495.1.S1_at--847--271Chr09:4554680..4554704 (25 bp)
ATAGGATGGATGCTTCCACCTTTGC
LOC_Os09g08670
Os.54495.1.S1_at--770--6331Chr09:4554688..4554712 (25 bp)
GATGCTTCCACCTTTGCAACATGGA
LOC_Os09g08670
Os.54495.1.S1_at--605--5151Chr09:4554703..4554727 (25 bp)
GCAACATGGAACTTCTAGTGCTACC
NONE
Os.54495.1.S1_at--713--3651Chr09:4554714..4554738 (25 bp)
CTTCTAGTGCTACCTGTAGTGAAAA
NONE
Os.54495.1.S1_at--323--3171Chr09:4554770..4554794 (25 bp)
AATTGAAGCCGAATGGCCTACCAAA
NONE
Os.54495.1.S1_at--844--6491Chr09:4554831..4554855 (25 bp)
GATAGAATCATACTGTTCTGGAGTA
NONE
Target Sequence 
TCTCTCGGGATTCGCCTCCGTTCATCCGCCCGTGCGGGAGAGCCTAGCGGAGCAGAAGCAGGCGCGCGCGGCGGCAGCGG
CGGCGGCGAGGAGTAGGAGGAGGAGGAAGGCGAGGACGAGGGCGAGGACGAGGACGAGGAGGGAGGATATGGCGGCGGCT
AGGGTTTCGATCCCGGCGGCGGTGCGGCGGACGATCCAGAACATCAAGGAGATCGCGGGCGGCCACACCGACGAGGAGGT
CTACGCCGTGCTCCGCGAATGCAACATGGATCCCAACGAGACCACCGATAGGCTTCTCAACCAAGTTGCACTGTACGGCT
GGTGGTTTCACTGTAGGCGCAGTGGTTTCTATAGGATGGATGCTTCCACCTTTGCAACATGGAACTTCTAGTGCTACCTG
TAGTGAAAATTTGAAGTTGATGCACAAATGTTTGTGTGGAAATTGAAGCCGAATGGCCTACCAAAATAAAGATGCCATAC
ATGTAAATCAAACTAAACTTGGATAGAATCATACTGTTCTGGAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54495.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis