Browse Element(s) Details


Os.54509.1.S1_at

Description gb:AK105487.1
DB_XREF= gi:32990696
TID=Os.54509.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54509 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-127-B09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-127-B09, full insert sequence.
FL= gb:AK105487.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1965011/11fatty acid elongase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g19600OsAffx.21897.5.S1_x_at3/119+11718719..11721661retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g19610OsAffx.20387.1.S1_x_at1/119+11723396..11726173retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g19620NANA9+11726504..11728083retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g19630OsAffx.31069.1.S1_x_at1/119+11729926..11732076retrotransposon protein, putative, unclassified
LOC_Os09g19640Os.10755.1.S1_at11/119+11734361..11739274holocarboxylase synthetase, putative, expressed
LOC_Os09g19650Os.54509.1.S1_at11/119+11742856..11748578fatty acid elongase, putative, expressed
LOC_Os09g19660OsAffx.17785.1.S1_x_at11/119+11760978..11761366NA
LOC_Os09g19670Os.14058.1.S1_at1/119+11766727..11770432retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0000038biological_processvery-long-chain fatty acid metabolism
GO:0030497biological_processfatty acid elongation
GO:0042335biological_processcuticle biosynthesis
GO:0008415molecular_functionacyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54509.1.S1_at--1021--3891Chr09:11743408..11743432 (25 bp)
CGTTTGGGCCACAGGTCGTAGAGCC
LOC_Os09g19650
Os.54509.1.S1_at--1017--4551Chr09:11743378..11743402 (25 bp)
GCGCCACACTGCATAGGTTCGGCAA
LOC_Os09g19650
Os.54509.1.S1_at--948--7751Chr09:11743289..11743313 (25 bp)
GGTGACCGCCTCTGGATGCTTGCCT
LOC_Os09g19650
Os.54509.1.S1_at--892--4891Chr09:11743255..11743279 (25 bp)
GCTTCAAGGCTTGCAGTAACGTCTG
LOC_Os09g19650
Os.54509.1.S1_at--567--6991Chr09:11743240..11743264 (25 bp)
GTAACGTCTGGCGTGCGCTCCGTGA
LOC_Os09g19650
Os.54509.1.S1_at--698--4511Chr09:11743202..11743226 (25 bp)
GCCGACAACCCCTGGAATGCATGCG
LOC_Os09g19650
Os.54509.1.S1_at--593--4171Chr09:11743150..11743174 (25 bp)
CGCCTTCAACGCGTAGGTCGAGTGG
LOC_Os09g19650
Os.54509.1.S1_at--1053--7291Chr09:11743123..11743147 (25 bp)
GTGCGCCCGCAATGGATTTTACACA
LOC_Os09g19650
Os.54509.1.S1_at--882--9751Chr09:11743086..11743110 (25 bp)
TAAGTTGCCTTAAGTTACCATTTTG
LOC_Os09g19650
Os.54509.1.S1_at--343--10551Chr09:11742979..11743003 (25 bp)
TTCTATTTTCTTCGTACTTCCTCAA
LOC_Os09g19650
Os.54509.1.S1_at--315--3031Chr09:11742907..11742931 (25 bp)
AATCCACTAGTGTTATTGTTCTTTA
LOC_Os09g19650
Target Sequence 
CGTTTGGGCCACAGGTCGTAGAGCCGGCGCGCGCCACACTGCATAGGTTCGGCAACACGTCGAGCAGCCTCGTCTTCTAC
GAGCTCGCCTACTTTGAGGCCAAGCGTCGCGTCCGTGCCGGTGACCGCCTCTGGATGCTTGCCTTCGGCACCGGCTTCAA
GGCTTGCAGTAACGTCTGGCGTGCGCTCCGTGACTCTGCACCCGATGCCGACAACCCCTGGAATGCATGCGCCCACCGCT
ACCCTGCTGCGCTGCCACCGCCTTCAACGCGTAGGTCGAGTGGCGGTGCGCCCGCAATGGATTTTACACACTTGAAAAAT
GATAAGTTGCCTTAAGTTACCATTTTGAAAATAAAAAATGAAAATAAACTTTAGTATTCTAAAAAGTTGGGTTGAGTTTT
TATATTCCATCAAGTAACATGTATTTTTTTTCTATTTTCTTCGTACTTCCTCAATTTTTTTAAAAAAAGTTAAATGATAT
ATATTTGTGATCGAACGGATTAATCCACTAGTGTTATTGTTCTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54509.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis