Browse Element(s) Details


Os.10755.1.S1_at

Description gb:AK071395.1
DB_XREF= gi:32981418
TID=Os.10755.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.10755 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023095O09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023095O09, full insert sequence.
FL= gb:AK071395.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1964011/11holocarboxylase synthetase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g19570Os.54527.1.S1_at11/119+11706234..11709471expressed protein
LOC_Os09g19570Os.18476.1.S1_at1/119+11706234..11709471expressed protein
LOC_Os09g19580OsAffx.20733.1.A1_x_at1/119+11713232..11714215retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g19580Os.45173.3.S1_x_at1/119+11713232..11714215retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g19590NANA9+11716007..11717189hypothetical protein
LOC_Os09g19600OsAffx.21897.5.S1_x_at3/119+11718719..11721661retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g19610OsAffx.20387.1.S1_x_at1/119+11723396..11726173retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g19620NANA9+11726504..11728083retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g19630OsAffx.31069.1.S1_x_at1/119+11729926..11732076retrotransposon protein, putative, unclassified
LOC_Os09g19640Os.10755.1.S1_at11/119+11734361..11739274holocarboxylase synthetase, putative, expressed
LOC_Os09g19650Os.54509.1.S1_at11/119+11742856..11748578fatty acid elongase, putative, expressed
LOC_Os09g19660OsAffx.17785.1.S1_x_at11/119+11760978..11761366NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10755.1.S1_at--463--10211Chr09:11738631..11738655 (25 bp)
TATTCCCAACACAATGAGCCAGCAG
LOC_Os09g19640
Os.10755.1.S1_at--257--3411Chr09:11738650..11738674 (25 bp)
CAGCAGCCATCACCAAACTTATTTG
LOC_Os09g19640
Os.10755.1.S1_at--444--7771Chr09:11738694..11738718 (25 bp)
GGTGCAGTCCAAGAACTCAGCGGTC
LOC_Os09g19640
Os.10755.1.S1_at--368--2011Chr09:11738708..11738732 (25 bp)
ACTCAGCGGTCTTTTCAAATGCACT
LOC_Os09g19640
Os.10755.1.S1_at--940--8291Chr09:11738832..11738856 (25 bp)
GGCTTCGAACGATTCATCCATGGAC
LOC_Os09g19640
Os.10755.1.S1_at--321--8131Chr09:11738853..11738877 (25 bp)
GGACATGCATTCAGACAGCCCAGCT
LOC_Os09g19640
Os.10755.1.S1_at--551--1471Chr09:11738942..11738966 (25 bp)
AGAATGTGTGCCTTTGCTACCACAG
LOC_Os09g19640
Os.10755.1.S1_at--943--1671Chr09:11739003..11739027 (25 bp)
AGCCTCCAATGATGCTAAGCTTGTA
LOC_Os09g19640
Os.10755.1.S1_at--717--9791Chr09:11739018..11739042 (25 bp)
TAAGCTTGTATTCTGTTGCTGCCAA
LOC_Os09g19640
Os.10755.1.S1_at--438--6671Chr09:11739032..11739056 (25 bp)
GTTGCTGCCAATCACCAGTTACTAG
LOC_Os09g19640
Os.10755.1.S1_at--677--9411Chr09:11739119..11739143 (25 bp)
TCGGTTTACCTGTGCATACTACTAC
LOC_Os09g19640
Target Sequence 
TATTCCCAACACAATGAGCCAGCAGCCATCACCAAACTTATTTGCGCTAGGAAATACAGGATTGGTGCAGTCCAAGAACT
CAGCGGTCTTTTCAAATGCACTATCTAGCCCCGTTCGCCGGAGCCTGCAACCATTCCACCTGGANCNGGGTGGCGATGCG
GGGTACTTCGCAAACGGCGTTAACCGCGATCAAAACTCGACGGCTTCGAACGATTCATCCATGGACATGCATTCAGACAG
CCCAGCTCATGACTCTTACTGAGTTGTTTGCCCCCTCTGTGGAGCTGGAAGAGCAACACTTCCAGTGGAACAGAATGTGT
GCCTTTGCTACCACAGCTCATGTAGGACTATTCAATTTAACCCCCCTCCCCTAGCCTCCAATGATGCTAAGCTTGTATTC
TGTTGCTGCCAATCACCAGTTACTAGTACCGATTACATTGCTAAGATATTGTAACTTGCATGTATTTATGTCCAGAGTAA
AACTGTACTCGGTTTACCTGTGCATACTACTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10755.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis