Browse Element(s) Details


Os.18476.1.S1_at

Description gb:AK073419.1
DB_XREF= gi:32983442
TID=Os.18476.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.18476 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) MCT-1 protein-like (B1011A07.33), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033044B03, full insert sequence.
FL= gb:AK104939.1 gb:AK073419.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2118011/11MLL, putative, expressed
LOC_Os09g195701/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g21130NANA1+11774954..11775648expressed protein
LOC_Os01g21144Os.31860.1.S2_a_at11/111+11782721..11786296expressed protein
LOC_Os01g21144Os.31860.1.S1_at11/111+11782721..11786296expressed protein
LOC_Os01g21160OsAffx.23317.1.S1_at11/111+11786626..117915102-oxo acid dehydrogenases acyltransferase family protein, expressed
LOC_Os01g21160Os.19003.1.S1_a_at11/111+11786626..117915102-oxo acid dehydrogenases acyltransferase family protein, expressed
LOC_Os01g21170Os.45735.1.A1_at3/111+11794211..11794432hypothetical protein
LOC_Os01g21180Os.18476.1.S1_at11/111+11794660..11798266MLL, putative, expressed
LOC_Os01g21190Os.14919.1.S1_at2/111+11800291..11806554SWIM zinc finger family protein
LOC_Os01g21190OsAffx.29313.1.S1_at2/111+11800291..11806554SWIM zinc finger family protein
LOC_Os01g21200OsAffx.23000.1.S1_at4/111+11807643..11808585hypothetical protein
LOC_Os01g21210NANA1+11814088..11821536retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006413biological_processtranslational initiation
GO:0003723molecular_functionRNA binding
GO:0003743molecular_functiontranslation initiation factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18476.1.S1_at--900--8391Chr01:11795998..11796022 (25 bp)
GGCGCTATCAAGTTTGTTCTCTCTG
LOC_Os01g21180
Os.18476.1.S1_at--114--6732Chr09:11707188..11707284 (25 bp)
GTTCTCTCTGGTGCAAACATAATGT
LOC_Os09g19570
Os.18476.1.S1_at--1159--2971Chr01:11795963..11795987 (25 bp)
AATGTGTCCTGGATTGACATCTCCA
LOC_Os01g21180
Os.18476.1.S1_at--967--5651Chr01:11795948..11795972 (25 bp)
GACATCTCCAGGTGGTTCCTTGGAT
LOC_Os01g21180
Os.18476.1.S1_at--986--4951Chr01:11794927..11794951 (25 bp)
GCATAATTTGCTGCGCCATATTGAA
LOC_Os01g21180
Os.18476.1.S1_at--706--3091Chr01:11794846..11794870 (25 bp)
AATAGCCAGCAGCTACATGGTGCTC
LOC_Os01g21180
Os.18476.1.S1_at--792--2111Chr01:11794832..11794856 (25 bp)
ACATGGTGCTCCAAGCCTGTTCGAG
LOC_Os01g21180
Os.18476.1.S1_at--712--4471Chr01:11794818..11794842 (25 bp)
GCCTGTTCGAGTTTACTGTGACCAT
LOC_Os01g21180
Os.18476.1.S1_at--822--5711Chr01:11794764..11794788 (25 bp)
GACTGATAGTGCTGTGTTCAACGCT
LOC_Os01g21180
Os.18476.1.S1_at--200--7431Chr01:11794751..11794775 (25 bp)
GTGTTCAACGCTTCACTTGGTATTA
LOC_Os01g21180
Os.18476.1.S1_at--980--2991Chr01:11794707..11794731 (25 bp)
AATGTTGGTAATCCTATCACTAATG
LOC_Os01g21180
Target Sequence 
GGCGCTATCAAGTTTGTTCTCTCTGGTGCAAACATAATGTGTCCTGGATTGACATCTCCAGGTGGTTCCTTGGATGTTGA
AGTTGAGGAGGAAACACCAGTGGCTATAATGGCTGAAGGCAAACAGCATGCATTGGCAATTGGATATACAAAGATGTCAG
CAAAGGACATTAAGACTATCAACAAAGGAATTGGAGTTGACAATATGCACTATCTAAATGATGGCCTGTGGAAGATGGAA
CGGCTCGAATAAGTAAAATCCACTAGGGAAGCATAATTTGCTGCGCCATATTGAAATGTAATGAGGGCTGGAATTATGTA
TCAATGCATCTTGTGTCATGTAAACACATAAAATAGCCAGCAGCTACATGGTGCTCCAAGCCTGTTCGAGTTTACTGTGA
CCATCAAGTTTTGGAGATGTTTGGCAAAACTTTGACTGATAGTGCTGTGTTCAACGCTTCACTTGGTATTATCAATCCAG
AACACTGTACAATGTTGGTAATCCTATCACTAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18476.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis