Browse Element(s) Details


Os.45735.1.A1_at

Description gb:NM_183720.1
DB_XREF= gi:34894567
GEN=B1011A07.32
TID=Os.45735.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.45735 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1011A07.32 (B1011A07.32), mRNA
DEF=Oryza sativa (japonica cultivar-group) B1011A07.32 (B1011A07.32), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g211703/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g21130NANA1+11774954..11775648expressed protein
LOC_Os01g21144Os.31860.1.S2_a_at11/111+11782721..11786296expressed protein
LOC_Os01g21144Os.31860.1.S1_at11/111+11782721..11786296expressed protein
LOC_Os01g21160OsAffx.23317.1.S1_at11/111+11786626..117915102-oxo acid dehydrogenases acyltransferase family protein, expressed
LOC_Os01g21160Os.19003.1.S1_a_at11/111+11786626..117915102-oxo acid dehydrogenases acyltransferase family protein, expressed
LOC_Os01g21170Os.45735.1.A1_at3/111+11794211..11794432hypothetical protein
LOC_Os01g21180Os.18476.1.S1_at11/111+11794660..11798266MLL, putative, expressed
LOC_Os01g21190Os.14919.1.S1_at2/111+11800291..11806554SWIM zinc finger family protein
LOC_Os01g21190OsAffx.29313.1.S1_at2/111+11800291..11806554SWIM zinc finger family protein
LOC_Os01g21200OsAffx.23000.1.S1_at4/111+11807643..11808585hypothetical protein
LOC_Os01g21210NANA1+11814088..11821536retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45735.1.A1_at--996--3172Chr01:11793887..11793911 (25 bp)
AATTGGTGTGTGATCACCTGTGTTA
NONE
Os.45735.1.A1_at--546--392Chr01:11793899..11793923 (25 bp)
ATCACCTGTGTTAGATCATTGGAGT
NONE
Os.45735.1.A1_at--206--5251Chr01:11793955..11793979 (25 bp)
GAATCAAGCTAGTATAAATCCAGGA
NONE
Os.45735.1.A1_at--76--9211Chr01:11793992..11794016 (25 bp)
TGCCAGCTCCAGTTGCTTGGTAGAT
NONE
Os.45735.1.A1_at--819--9052Chr01:11794005..11794029 (25 bp)
TGCTTGGTAGATCGATGGATACGCA
NONE
Os.45735.1.A1_at--777--751Chr01:11794107..11794131 (25 bp)
ATGTACTTGATGACAGTCGTCGGCA
NONE
Os.45735.1.A1_at--219--5651Chr01:11794118..11794142 (25 bp)
GACAGTCGTCGGCAGTTTCAGTTCC
NONE
Os.45735.1.A1_at--46--9452Chr01:11794126..11794150 (25 bp)
TCGGCAGTTTCAGTTCCTCGCGGCA
NONE
Os.45735.1.A1_at--556--5891Chr01:11794334..11794358 (25 bp)
GAGCGGATGCGCGATCTTGAGATTC
LOC_Os01g21170
Os.45735.1.A1_at--134--3631Chr01:11794349..11794373 (25 bp)
CTTGAGATTCTTGACGGTGCGGCCA
LOC_Os01g21170
Os.45735.1.A1_at--1087--91Chr01:11794355..11794379 (25 bp)
ATTCTTGACGGTGCGGCCAGCAGGA
LOC_Os01g21170
Target Sequence 
AATTGGTGTGTGATCACCTGTGTTAGATCATTGGAGTGATTGGAGAGATAATAGTGTGAGATGCATATGAATCAAGCTAG
TATAAATCCAGGAACAGGAGCAGACTGCCAGCTCCAGTTGCTTGGTAGATCGATGGATACGCAAGAGGGATAAATTTGAT
ATAGTGACAGAAATAAAAGAGGGATAGGAGGAGAAGAAAAAGCAAGCCATTAATTGATGGATGTACTTGATGACAGTCGT
CGGCAGTTTCAGTTCCTCGCGGCACCGCGATGCGAAGAGGCGAGCAGGCACGGGAGAAGAAGCGACGCGGGAGCGGGGCG
CGCGATGCAACCAGGGGACAGGGGGGCATCGCGCCCCGGGCACTGCAAGCGGGATCGCCCGGCGCGGGAGGCCATGGGGT
GCAGGCGTGAGCACGCTAGCTGGGATGCGATGCGATGGGGGTCGAAGGAGCGGATGCGCGATCTTGAGATTCTTGACGGT
GCGGCCAGCAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45735.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis