Browse Element(s) Details


OsAffx.23000.1.S1_at

Description gb:NM_183722.1
DB_XREF= gi:34894571
GEN=B1012D10.4
TID=OsAffx.23000.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1012D10.4 (B1012D10.4), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g212004/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g21144Os.31860.1.S2_a_at11/111+11782721..11786296expressed protein
LOC_Os01g21144Os.31860.1.S1_at11/111+11782721..11786296expressed protein
LOC_Os01g21160OsAffx.23317.1.S1_at11/111+11786626..117915102-oxo acid dehydrogenases acyltransferase family protein, expressed
LOC_Os01g21160Os.19003.1.S1_a_at11/111+11786626..117915102-oxo acid dehydrogenases acyltransferase family protein, expressed
LOC_Os01g21170Os.45735.1.A1_at3/111+11794211..11794432hypothetical protein
LOC_Os01g21180Os.18476.1.S1_at11/111+11794660..11798266MLL, putative, expressed
LOC_Os01g21190Os.14919.1.S1_at2/111+11800291..11806554SWIM zinc finger family protein
LOC_Os01g21190OsAffx.29313.1.S1_at2/111+11800291..11806554SWIM zinc finger family protein
LOC_Os01g21200OsAffx.23000.1.S1_at4/111+11807643..11808585hypothetical protein
LOC_Os01g21210NANA1+11814088..11821536retrotransposon protein, putative, unclassified
LOC_Os01g21220NANA1+11823453..11825715retrotransposon, putative, centromere-specific
LOC_Os01g21230NANA1+11828491..11834481MtN3/saliva family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23000.1.S1_at--865--91Chr01:11809780..11809804 (25 bp)
ATTCCCTCCGAGACAACATCGTTGG
NONE
OsAffx.23000.1.S1_at--255--3551NONE
CATCGTTGGGATTGGTTTTTCTACT
NONE
OsAffx.23000.1.S1_at--979--5731Chr01:11807825..11807849 (25 bp)
GACGGAGGACACAACAAGCTACAAC
LOC_Os01g21200
OsAffx.23000.1.S1_at--524--2031Chr01:11807784..11807808 (25 bp)
ACTATTCCATGATGCCACTCTCGTG
LOC_Os01g21200
OsAffx.23000.1.S1_at--561--591Chr01:11807773..11807797 (25 bp)
ATGCCACTCTCGTGGACCGTGGTGA
LOC_Os01g21200
OsAffx.23000.1.S1_at--694--1451Chr01:11807712..11807736 (25 bp)
AGAAGAGAATCATGTCCCGATCCCC
LOC_Os01g21200
OsAffx.23000.1.S1_at--847--10751Chr01:11807575..11807599 (25 bp)
TTGATAGGGTGGGAGCATCATCCCC
NONE
OsAffx.23000.1.S1_at--883--1751Chr01:11807548..11807572 (25 bp)
ACCTCGTTGCCACTGGGCTGTTGAT
NONE
OsAffx.23000.1.S1_at--83--6191Chr01:11807487..11807511 (25 bp)
GAGGACGAGCTCAATTTGTGCGGAT
NONE
OsAffx.23000.1.S1_at--542--3111Chr01:11807475..11807499 (25 bp)
AATTTGTGCGGATGCTCGCTCACGA
NONE
OsAffx.23000.1.S1_at--148--2151Chr01:11807442..11807466 (25 bp)
ACAGCAAGAGTTGCCGGTCTTGGGT
NONE
Target Sequence 
ATTCCCTCCGAGACAACATCGTTGGGATTGGTTTTTCTACTCCCTTCCTCTTCNTNNCANATTTAGCGGTCGAGAAGGGG
CACTCAGAGGTAGTCGAGAATGAGGACTTTAGGTTGGAACTCAATGTTGGTGACGGAGGACACAACAAGCTACAACAACA
TCGTCGCCCGCCACTATTCCATGATGCCACTCTCGTGGACCGTGGTGAGGCTAGCCCGAGAGGCGGTCTAGGAGGCAGCT
GTAGAGAAGAGAATCATGTCCCGATCCCCCACGGGCTCCACCTCTTAGATCACCAANTCANNANNNNGTNNNNNNNCNCN
NNNNNCNCCACNTCNNNGTTTGATAGGGTGGGAGCATCATCCCCCCACCTCGTTGCCACTGGGCTGTTGATGAGGCAAGC
TATTGCACCCCTCACAACTTACTCGATGAGGACGAGCTCAATTTGTGCGGATGCTCGCTCACGATGCGAGCAACAGCAAG
AGTTGCCGGTCTTGGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23000.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis